Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1045 ATGGCCAGCAGATTTTGGTTTGGAAAGAAGAAAAGTAGTAGCAGCCATGGTGGCGGTTCAGAAAAGAAGTTCTCATTGGACGATGCTTCTCTCGCCGCAAAACCCAGAAGGCGAACCAGCTTCTTGTTTTCTTCTCCTTCTCCACTGCAAGGGTCGAGGCACATTGAGAGGGATAATAGATCCTTAACCCCAACAAGATCTGAATATTCCGTATCAACAACACCACCACCCTTTCCCTTTCGACAACATCATCATCATGATGAAGATTCATTGCCTCCACCAGCCACTTGTTTAAGCTTCAAATGGAAAAATATCTTTAAGCCATGGAAGAAGAAGAATAATAATAATATAAGATCATCATCACCATCAACTACTAGGCCCTCTCCTCCTCCTCCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACCGCCGCTGCCAAACCGAGGCCATGGCAACTTTAATTTTCCTCCGCTCATCGCTTTCAGATCCTTCCAAATTCGTCATGCAACCAACAATTTTAGCAGAGAGAATTTAATTGGAAGAGGTGGGTATGCTGATGTTTTCAAGGGTCGTCTGAATGGGGAAATGTTCAGAAAAGGAATTCTGCCTCGTCTTCCAACTTTCTCCACTTGGAAGTTTAGCTTCTATTCTCCATGGCGAATCATTCATAGAGATATTAAATCTGATAATATTCTGCTCACTAAAAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCACCAGATGCTGATCAGCAACATGTCACAAAATTTGAAGGCACATTTGGGTATTCTGCTCCTGAATATTTGACGCATGGAATAGTAGATGAGAAAACAGATGTTTATGCATTTGGGATCCTGTTGCTGGAGATTTTAACCGGGCGTAAGGCCTTGGATTATTTGCAACAAAGCATTTTGATATGGGCAAAGCCATTAATTGATGCTCATAATGTTAAGGAGCTTGTTGATCCATCACTTGGTGAAGATTATGACATAGAGCAGGTGGAACGTCTTCTTTTGACTGCTTCTCTCTGTGTTGAGCATTCTCCATTCTTGCGTCCTCGCATGGTTCAGGCAAGCATTTATTCTTACTACTGTGCTTATTTTTTTGCTGAAATAAACTAA 1161 0.4289 MASRFWFGKKKSSSSHGGGSEKKFSLDDASLAAKPRRRTSFLFSSPSPLQGSRHIERDNRSLTPTRSEYSVSTTPPPFPFRQHHHHDEDSLPPPATCLSFKWKNIFKPWKKKNNNNIRSSSPSTTRPSPPPPSSSSPPPPPPPPPPPPPPPPLPNRGHGNFNFPPLIAFRSFQIRHATNNFSRENLIGRGGYADVFKGRLNGEMFRKGILPRLPTFSTWKFSFYSPWRIIHRDIKSDNILLTKNFEPQICDFGLAKWLPPDADQQHVTKFEGTFGYSAPEYLTHGIVDEKTDVYAFGILLLEILTGRKALDYLQQSILIWAKPLIDAHNVKELVDPSLGEDYDIEQVERLLLTASLCVEHSPFLRPRMVQASIYSYYCAYFFAEIN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1045 386 SUPERFAMILY Protein kinase-like (PK-like) 174 377 IPR011009 -
Amo16g1045 386 Gene3D Transferase(Phosphotransferase) domain 1 225 376 - -
Amo16g1045 386 MobiDBLite consensus disorder prediction 1 92 - -
Amo16g1045 386 Gene3D Phosphorylase Kinase; domain 1 162 214 - -
Amo16g1045 386 PANTHER OS08G0249100 PROTEIN 164 201 - -
Amo16g1045 386 PANTHER OS08G0249100 PROTEIN 228 375 - -
Amo16g1045 386 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 164 201 - -
Amo16g1045 386 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 228 375 - -
Amo16g1045 386 SUPERFAMILY Formin homology 2 domain (FH2 domain) 142 152 - -
Amo16g1045 386 ProSiteProfiles Protein kinase domain profile. 1 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1045 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Amo16g1045 386 MobiDBLite consensus disorder prediction 15 34 - -
Amo16g1045 386 MobiDBLite consensus disorder prediction 111 160 - -
Amo16g1045 386 MobiDBLite consensus disorder prediction 124 158 - -
Amo16g1045 386 Pfam Protein kinase domain 228 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g1045 386 SMART serkin_6 181 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1045 Amo-Chr16 16936877 16943344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1045 228 371 Trihelix Transcription Factor Family AT1G70460 49.020 1.00e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo16g1045 Pkinase 3.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1045 - - aip:107646486 306.219