Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1029 ATGACGAAGGACAAAAACGACCAAACCAGCTCCTTTCTTTTCATTTTCTTCTTCCTTCTCTCCGTTCCGTCAACCTTTGCGCAGAACCAAAATGACGTTTCTAACAATAACAACAACTACAACACGCAGTTCAGCCCTTCGCTCGCGATAATCGTCGTCATTCTCGTTGCAGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCGCCGATTCACCCTCCGGCACCGTCCTTCCAACCACGGGAGGCGGAAGGTCCAGAAGAGGGGCACGTGGTCTCGATCCTGCAGTGATCGAGACTTTCCCGATTCTGGAGTATTCGGAGGTCAAGATCCACAAGATTGGAAAAGAGGTTCTTGAATGTGCGGTGTGCCTCTGTGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCCAAGTGTGACCATGTGTTCCATCCGGAGTGCATCGACGAGTGGCTAGCCTCCCACACAACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCGCAACCCGGCGAGTCAGTCCATGCGGTTCCACTCGTGCCAACCACCGATGTCGAGGCGCAAAACGACGCCGTCGTTGACACCGCAGTGCCGGAGGTGCGTGTCAACGTGGCGGATGCTGAAGGAGGAGTCGCGGCGTCGTCGGAGCCGGAAGTGATTGCGATTCCGAAAAGCTTGACGCTGAATCGGAACAGGACGACGCGCGGTTCCAACCGGAGGAGGCAGTTCCCTCGGTCGCACTCGACCGGGCATTCTCTGGTCCAACCGGGAGAGAACACGGACCGGTTCACTTTGAGATTGCCTGTGGCCGTTAGAAGAGAGATAATAAACCGGGAGTTGCAACGGTCTAACAGCTTGTTGGTTTTGCCTAGGGACGGTAGTTCGAGACAGGGAAGTAGTAGGGGAAGGACTTTGAGGCGGTTGGACCGGAGTTTCAAATCCGACCGGTGGGTTTTGACGATGGCGCCACCGTTCTTGGTCAGAGGATCTTCGGTTAGGTCGCCGAAGGTGGTTGATAGCACCGGCGGGGCAGGGGCGGCGTCTTCGTCTACAGCCCCTATTTTGCCGCCGTCGGCCGTTGACTCTGCTCGACCTCCGGTATGA 1113 0.5642 MTKDKNDQTSSFLFIFFFLLSVPSTFAQNQNDVSNNNNNYNTQFSPSLAIIVVILVAALFLMGFFSIYIRHCADSPSGTVLPTTGGGRSRRGARGLDPAVIETFPILEYSEVKIHKIGKEVLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHAVPLVPTTDVEAQNDAVVDTAVPEVRVNVADAEGGVAASSEPEVIAIPKSLTLNRNRTTRGSNRRRQFPRSHSTGHSLVQPGENTDRFTLRLPVAVRREIINRELQRSNSLLVLPRDGSSRQGSSRGRTLRRLDRSFKSDRWVLTMAPPFLVRGSSVRSPKVVDSTGGAGAASSSTAPILPPSAVDSARPPV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1029 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 171 IPR013083 -
Amo16g1029 370 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 314 - -
Amo16g1029 370 SUPERFAMILY RING/U-box 123 173 - -
Amo16g1029 370 CDD RING-H2_EL5_like 123 166 - -
Amo16g1029 370 MobiDBLite consensus disorder prediction 333 370 - -
Amo16g1029 370 Pfam Ring finger domain 123 166 IPR001841 -
Amo16g1029 370 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Amo16g1029 370 SMART ring_2 124 165 IPR001841 -
Amo16g1029 370 PANTHER RING FINGER DOMAIN-CONTAINING 5 314 - -
Amo16g1029 370 MobiDBLite consensus disorder prediction 234 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1029 Amo-Chr16 16723050 16724936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1029 10 345 Rapid Response to Elicitors AT3G05200 46.389 4.34e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1029 K10664 - gmx:100781706 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1029 16 16723050 16724936 Amo16g1029 16 16723050 16724936 ECH