Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1005 ATGGGTCTCGGCACCGACAACGACAACGATGACGACGGAGTCACCAACCCTTCTCCCTCCGTCTCTTGCTCTATTTGTCTCGAGCCCGTTGCCCGCAGCGGCGATAGATCCTGGGCCAACCTTCAATGCGGCCATCAATTTCACCTCGATTGCATTGGCTCAGCCTTCAATATAAAAGGGGCAATGCAATGCCCTAATTGCCGGAAGATTGAGAAAGGCCAGTGGCTTTATGGTTCCCGGTCATATCCGGAGTTCAGCTCAGACGATTGGACACATGATGAGGATCTATACGATCTTAGCTACTCTGAAATGTCCTTTGGAGTTCACTGGTGCCCTTTTGGTAACTTGACCCGACTTCCTTCTGCCTTCGAAGAAGGGGAATTTTCATCAACTGCATATCCTGATATACTCGGACACCATGCTATATTTGCGGAACATACAGCAGTGTCATCTGGTAGTCATCCTTGTCCGTATATAGCTTATTTTGGACCTATACATCCCTCCACCTCCAACTCTGGCGGAAATGGCTCGGAAGCATCTAACTTCAACCACTGGAGTGGCCCTCCTATACCTAGCGACTTGCCAACCTCCTATGCGTTTCCAGCCTTGGATCTCCATTATCCCAGTTGGGAACACCATTCATCTCATTTTTCTTCTGCGAACAGCCGTCTAGGCACTGCAGATCAGCCCTCAGTATCGCCTGGTAGTCAAAGGCCAGGCAGGGGTAGTTTGGAGATCCCAAGATCGGGATCTTTTATGCATCCCTTCATTGTTGGTCACAGTTCTGGTGCTAGAGCTGGGGCATCAGTTGCATCTTCAATGATACCTCCATATCCAGGTAGCAATGCCCGGGCCCGAGACAGAGTCCAGGCTCTTCAGGCATACTATCAACCTCCACAACCTCCTAATTCTACCTCAATGCGGACTCCTAATGCCTCTGACACTAGAAGGTCCAGCAGCCATAATGGGTCAGCTCAATTAGCACAAGTGGCCTCATCACCAGACCAAAGCGGTGGCTTCTTATTGATTCCATCAGGTTCATCGGGACGCAATTTTCCGGAAGAAGCCCATCTGCCAAGTCGCTTCCAAGCTTGGGAAAGAGATCACTTGCCTTCATTATCATTCAATCATGTGGATAGAGAATCAAGTTGGAGAGCATACCACCAGGCTGCCAGTGGATCAGAGCCAAGTTTCAGGTCCAGCAGCTTTCAGTTGAGGCACGGATCAGAAAGAATGCCTTCACAAAATCGATGA 1254 0.4968 MGLGTDNDNDDDGVTNPSPSVSCSICLEPVARSGDRSWANLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYGSRSYPEFSSDDWTHDEDLYDLSYSEMSFGVHWCPFGNLTRLPSAFEEGEFSSTAYPDILGHHAIFAEHTAVSSGSHPCPYIAYFGPIHPSTSNSGGNGSEASNFNHWSGPPIPSDLPTSYAFPALDLHYPSWEHHSSHFSSANSRLGTADQPSVSPGSQRPGRGSLEIPRSGSFMHPFIVGHSSGARAGASVASSMIPPYPGSNARARDRVQALQAYYQPPQPPNSTSMRTPNASDTRRSSSHNGSAQLAQVASSPDQSGGFLLIPSGSSGRNFPEEAHLPSRFQAWERDHLPSLSFNHVDRESSWRAYHQAASGSEPSFRSSSFQLRHGSERMPSQNR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1005 417 MobiDBLite consensus disorder prediction 217 248 - -
Amo16g1005 417 CDD RING-H2 23 68 - -
Amo16g1005 417 MobiDBLite consensus disorder prediction 217 238 - -
Amo16g1005 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 77 IPR013083 -
Amo16g1005 417 Pfam Ring finger domain 22 68 IPR001841 -
Amo16g1005 417 PANTHER PROTEIN, PUTATIVE-RELATED 5 417 - -
Amo16g1005 417 MobiDBLite consensus disorder prediction 388 417 - -
Amo16g1005 417 MobiDBLite consensus disorder prediction 296 354 - -
Amo16g1005 417 PANTHER OS09G0511500 PROTEIN 5 417 IPR044274 GO:0004842
Amo16g1005 417 SUPERFAMILY RING/U-box 17 70 - -
Amo16g1005 417 ProSiteProfiles Zinc finger RING-type profile. 23 68 IPR001841 -
Amo16g1005 417 SMART ring_2 23 67 IPR001841 -
Amo16g1005 417 MobiDBLite consensus disorder prediction 296 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1005 Amo-Chr16 16323439 16327921 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1005 - - ahf:112758092 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1005 16 16323439 16327921 Amo19g1622 19 39610917 39620283 PCT