Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0980 ATGAGAATGAATGTGTTTGTGATAGCCGCACTTGCTTTTGTGTCTCTAGTTTCCGTCATTGATGGATCTGAGCATCAGCCTCAGCTATCTGAGTTTGTAAACGATGCTTTATTCTCATCAGTTTCAAGCAAGCAGCCTTCCCAGCCACAACCTCTCATGGTTCCCATTACTGTTATCAATGGAGCTGCTGCCAAAGGAGCTGTATGTTTGGATGGAACATCGCCTGCCTATCACTTTCATCCTGGATCCGGATCAGGAGCCAATAGTTGGCTCATTCACTTAGAGGGAGGAGGATGGTGTAATACCATCAGAAATTGTGTTTTTAGGAAGACGACTCGGCGTGGTTCCTTTAAATTCATGGAAAAGACACTGCCATTCACTGGGATATTGAGCAATAAACCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAATACGTTACTGTGATGGAGCATCTTTCGCCGGAGACAGTCAAAATGAGGCTAATCAGCTTCAATTTCGAGGACAGAAAATATGGCTAGCTGCAATCGAGGAATTAATGTCCAAAGGAATGCAAAAAGCCAACCAGGCACTTTTGTCTGGATGCTCTGCAGGTGGTCTYGCATCTATAATACATTGTGATGAATTCGGAAGCATGTTTCCAAAATCTACCAAAGTGAAATGTTTGAGTGATGCAGGATTTTTTCTTGATGCAGTTGATGTGTCTGGGGGGCACACACTGAGGAATATGTTTGGAGGTGTAGTTACATTACAGGAAGTACAAAAAAACTTACCAAAAAGTTGTCTCAACCAACTGGATCCAACTTCGTGCTTCTTTCCTCAAAACTTGATCCAGCATGTTCAAACTCCATTGTTTCTTCTCAATGCAGCTTATGATGCATGGCAGGTGCAAGAAAGTCTAGCCCCCCATTCAGCGGATCCAAGTGGTTCTTGGAATGATTGTAAAGCAAATCATGCAAGGTGTAACTCATCTCAAATACAGTTCTTCCAAGACTTTAGAAATCAAATGCTAAATGATGTGAAAGACTTCTCAAGGTCCTCTCCAACTGGATTGTTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCGCTTATCAACGACATGCCTGTGGCGATTGCTGTTGGAGACTGGTTTTTTGATCGAAAAACTATCAAAGCTATTGATTGTGCTTATCCCTGTGACACAACCTGCCATAATCTGGTCTTCAATGTTGCTAGATCTACCGTGGTTGACTCCCAGTATATAAGTGAAAGTGATGACACATCCACCACCACCACCATGATATATTCCTCTCAGTCCTCCAGGTTGACTTTTCCTGCTCTATACCTACTAAGTGCTTTGTTTCCCACTTCCATGTTCCTACTGCACCTTAGAGTAGAAGTACTATCAAGATTCTTTAGCCATTCCACATAA 1455 0.4213 MRMNVFVIAALAFVSLVSVIDGSEHQPQLSEFVNDALFSSVSSKQPSQPQPLMVPITVINGAAAKGAVCLDGTSPAYHFHPGSGSGANSWLIHLEGGGWCNTIRNCVFRKTTRRGSFKFMEKTLPFTGILSNKPEENPDFFNWNRVKIRYCDGASFAGDSQNEANQLQFRGQKIWLAAIEELMSKGMQKANQALLSGCSAGGLASIIHCDEFGSMFPKSTKVKCLSDAGFFLDAVDVSGGHTLRNMFGGVVTLQEVQKNLPKSCLNQLDPTSCFFPQNLIQHVQTPLFLLNAAYDAWQVQESLAPHSADPSGSWNDCKANHARCNSSQIQFFQDFRNQMLNDVKDFSRSSPTGLFINSCFAHCQSERQDTWFADDSPLINDMPVAIAVGDWFFDRKTIKAIDCAYPCDTTCHNLVFNVARSTVVDSQYISESDDTSTTTTMIYSSQSSRLTFPALYLLSALFPTSMFLLHLRVEVLSRFFSHST* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0980 484 Pfam Pectinacetylesterase 48 397 IPR004963 GO:0016787
Amo16g0980 484 PANTHER PECTIN ACETYLESTERASE 4 433 - -
Amo16g0980 484 PANTHER NOTUM-RELATED 4 433 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0980 Amo-Chr16 15832338 15836849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0980 47 417 Carbohydrate Esterase AT2G46930 72.237 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0980 K19882 - gmx:100785270 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0980 16 15832338 15836849 Amo06g0055 06 578807 583321 hybridization
Amo16g0980 16 15832338 15836849 Amo19g1336 19 27271464 27275274 PCT
Amo16g0980 16 15832338 15836849 Amo09g0757 09 12614418 12618291 PCT
Amo19g1336 19 27271464 27275274 Amo16g0980 16 15832338 15836849 PCT
Amo09g0757 09 12614418 12618291 Amo16g0980 16 15832338 15836849 PCT