Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0977 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTATGGTCTCCTGAAGAGGATGAAAAGCTTCTGAGGCATATCACTAAGTACGGTCATGGATGTTGGAGCTCTGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTGTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGCATAGACCCTGTTACACACAAGCCATTATCTGAYWTYMKYYAMGYYWWGWSKSAGYWYKAAGAGAAAGCATTGTCCAATGATAATGAATTGAACTTGTTGAGATCAGAGAGTTCCAATAAGTCTGATGGAGCTTCTTCCTATGATCATCAACAACAACAACAACAACAACAACAACAAGGATTTGTTCCAACATCAGAGATGGAAGGTTCTTCTTCCACTAACAAGGACATTTTCCTTGACACTACAACAAGGTTCATGGCTAACACTTGCTCAGATTTTATGGGCAACTACAACATGAGTTATGCATCATCATCTTCCAATGTCACTGTCACCGACAACAATTGGTTCACACAAACATCAAGGCCTTCTTTTGATATCAACTCAGATTTCACCTCATCATCATCATTCCTACCTGGTTCCTTTTGCTACAAGCCAGAATCTCTCAAGAACACCAACATGCTTTCTTCTTCTTCTTCTTCATGGGGATTGATCACAGATTGCAGCATGGAAGAAGCAGAAGAGGCAAAGTGGTCTGAGTATCTTCACAATCAAATGTTGATGCTTGCAGCTGTTCAGAACAACAACAACAACAACAACAACAACAACCAAGCTTCTTTATGCAATGAGATAAAGCCTCTTCCTTCAACCACCACAGTAACAACAACACCACCACCACATTTGGTTCCTGATACTTTAGGGGCTATCATGTTACCTCATTCCAAGAATCAACATCACCATACATCACAAACTTCTTCTACCACCACCTTTTCCAAGGATATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1173 0.4109 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSDXXXXXXXXXEKALSNDNELNLLRSESSNKSDGASSYDHQQQQQQQQQQGFVPTSEMEGSSSTNKDIFLDTTTRFMANTCSDFMGNYNMSYASSSSNVTVTDNNWFTQTSRPSFDINSDFTSSSSFLPGSFCYKPESLKNTNMLSSSSSSWGLITDCSMEEAEEAKWSEYLHNQMLMLAAVQNNNNNNNNNNQASLCNEIKPLPSTTTVTTTPPPHLVPDTLGAIMLPHSKNQHHHTSQTSSTTTFSKDIQNLTAAFGHI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0977 390 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Amo16g0977 390 Gene3D - 69 132 - -
Amo16g0977 390 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo16g0977 390 CDD SANT 17 61 IPR001005 -
Amo16g0977 390 SMART sant 13 63 IPR001005 -
Amo16g0977 390 SMART sant 66 114 IPR001005 -
Amo16g0977 390 MobiDBLite consensus disorder prediction 148 194 - -
Amo16g0977 390 Gene3D - 11 67 - -
Amo16g0977 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo16g0977 390 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g0977 390 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Amo16g0977 390 MobiDBLite consensus disorder prediction 123 194 - -
Amo16g0977 390 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g0977 390 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo16g0977 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo16g0977 390 CDD SANT 69 109 IPR001005 -
Amo16g0977 390 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0977 Amo-Chr16 15778066 15780058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0977 1 131 MYB Transcription Factor Family AT4G01680 94.656 1.56e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g0977 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0977 K09422 - gmx:100819449 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0977 16 15778066 15780058 Amo16g0977 16 15778066 15780058 ECH
Amo16g0977 16 15778066 15780058 Amo06g0060 06 627747 629385 hybridization
Amo16g0977 16 15778066 15780058 Amo19g1333 19 27103336 27105968 PCT
Amo16g0977 16 15778066 15780058 Amo09g0755 09 12528758 12530294 PCT
Amo19g1333 19 27103336 27105968 Amo16g0977 16 15778066 15780058 PCT
Amo09g0755 09 12528758 12530294 Amo16g0977 16 15778066 15780058 PCT