Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0960 ATGGCGGGGTCGGGAAAGATTATAGCTGCTGTTGTTTCAATTCTACTTGTAGTAGGAGTTGTTGTTGGTGCCGTGGTRGTTGTGAACAACAACGGCASCGGMAACAATGGAGGAGAGTTGAAGACGTCGAACAAGGCGGTGAGCGCAGTGTGTCAAAGCGCCGATGATCAGAAGCTCTGCCACGACGTGCTGACACCTGTGAACTCATCAAATCCCAAGGACTACATCACGCAGGTGGTGAAATTCTCCACGGAAAGCGTGTTGAAAGCCCTTAACATGAGCGACAGGCTCATGGTGGAGAGCGTGGCCAACGGCACCAGCGACGGAGGCGTCAAGATGGCTCTGGACGACTGCAAAGACCTCTTGCAATCAGCGATCCACGAGCTTGAGGCCTCCGGCGTGTTTGTGAACAGCCAATCGCTTCCGGAAGTGTTCACAAACAGTGCGGAGCTGAAGAACTGGTTGGGCGCCGTGATCGCCTACCAGCAATCTTGCCTTGACGGGTTCGACACCGATGGGGAGAAGCATGTCCAAGGTCAGTTGCAGAGCGAGAGCTTGGATAGCGTGATGAAGCTCACCGCCTTGGCCCTGGATGTTGTCGCCGGTGTCTCTAAGGTTCTGTCTGAGTTAGGGCTCAACTTGACCAACAGGCCCGTTCGTCGCCTCCTTGGGCTTGATAAATATGGCTTCCCAAGTTGGTTGTACCCTCATGACCGTAAGCTCATCAATGAGGCCAGCCAGGGTTCCATTGTCCCGAACGCTGTTGTTGCCAAGGATGGTAGTGGCCAGTACAAGACTGTTTTGGAAGCCATTAATGCTTACCCCAAGAAACACCAAGGCAGGTGGGTTATCTATGTTAAGGCTGGTATCTACGACGAGTACATCACCGTCGACAAGGCCAAGCGTAACATCTACATGTACGGTGATGGCCCCGCCAAAACCATCATCACCGGTCGCAAGAACTTCGCTGAAGGTGTCAAGACCATGAGGACTGCCACCTTCACCACCGTTGCTGAGGGATTCATTGCTAAGGGTATTGCTTTTGAGAACACCGCCGGTCCAGGTGGACACCAAGCAGTGGCCCTCCGCGTGATGGGTGACCGCTCAGCCTTCTTCGACTGCGCGTTCCGTGGCCACCAAGATACCTTGTACGCCCATGCTCACCGTCAGTTCTATCGCAACTGCGAAATTAGYGGCACCATTGACTTCATCTTCGGCTACGCTTCAACCTACATCCAGAACTCCAAGATCATCGTGAGGAAGCCCAAGGCAAACCAGCAGAACATCATCGTTGCTGACGGTACCGACCAGAAGAACATGCCATCGGGTGTAGTCCTCCATAACTGCCAGATCTTGGCAGAGCCAAGCCTGGAAGCAGAGAACGGGAAGGTGAGAACCTTCTTGGCAAGACCATGGAAGGCGTTCTCGAGGGCAGTGTTCATTGAGAACACCATCGGTGGCTTCATCAACAAGGAGGGTTACATTCCATGGTCACCAGCTGCCCCCAACAACGAGCACGCATACTTTGGTGAGTTCGGAAACATTGGAGCTGGTGCTGATGCTTCTGGAAGGGTCAAGTGGGCCAAGGGTCTTATCTCCAAGGATGAGGCTTCTCAGTTCACTGTTGACAATTTCCTCCAAGCTAACTCATGGTTGCACGACACTGGTTTTCCTTTTGATGCTAGCTTCACCAAGAACTAA 1701 0.5291 MAGSGKIIAAVVSILLVVGVVVGAVVVVNNNGXGNNGGELKTSNKAVSAVCQSADDQKLCHDVLTPVNSSNPKDYITQVVKFSTESVLKALNMSDRLMVESVANGTSDGGVKMALDDCKDLLQSAIHELEASGVFVNSQSLPEVFTNSAELKNWLGAVIAYQQSCLDGFDTDGEKHVQGQLQSESLDSVMKLTALALDVVAGVSKVLSELGLNLTNRPVRRLLGLDKYGFPSWLYPHDRKLINEASQGSIVPNAVVAKDGSGQYKTVLEAINAYPKKHQGRWVIYVKAGIYDEYITVDKAKRNIYMYGDGPAKTIITGRKNFAEGVKTMRTATFTTVAEGFIAKGIAFENTAGPGGHQAVALRVMGDRSAFFDCAFRGHQDTLYAHAHRQFYRNCEISGTIDFIFGYASTYIQNSKIIVRKPKANQQNIIVADGTDQKNMPSGVVLHNCQILAEPSLEAENGKVRTFLARPWKAFSRAVFIENTIGGFINKEGYIPWSPAAPNNEHAYFGEFGNIGAGADASGRVKWAKGLISKDEASQFTVDNFLQANSWLHDTGFPFDASFTKN* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0960 566 Pfam Plant invertase/pectin methylesterase inhibitor 46 198 IPR006501 GO:0004857
Amo16g0960 566 SUPERFAMILY Pectin lyase-like 253 560 IPR011050 -
Amo16g0960 566 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Amo16g0960 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 203 IPR035513 -
Amo16g0960 566 PANTHER PECTINESTERASE 7 563 - -
Amo16g0960 566 PANTHER PECTINESTERASE 7 563 - -
Amo16g0960 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Amo16g0960 566 CDD PMEI-like_3 49 205 - -
Amo16g0960 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Amo16g0960 566 Gene3D - 247 563 IPR012334 -
Amo16g0960 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 33 199 IPR006501 GO:0004857
Amo16g0960 566 SMART PMEI_2 42 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0960 Amo-Chr16 15424463 15426389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0960 5 558 Carbohydrate Esterase AT3G62170 37.925 6.34e-128 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0960 K01051 - gmx:100808559 758.444