Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0957 ATGACTGCTGAGGCCACCACCTCCAAAGGCACCGTGCTGGCTCGGTCGCTCAAGGAGGCTGAAATGCAGTATTCGTCGGCCAAGGTATCAGTGTGGTGGGACATAGAGAACTGCCCTGTGTCTCGTGGCTGCGACGCGCATTCGATCGCAAAGAACATCAGYTCCGCACTGGTTCGCATGAACTACTGCGGCCCCGTCTCCATCTCAGCGTACGGCGACACCAAMCGCATTCCATCGTCCGTGCAGCACGCGCTCTCCAGCACCGGCATCTCCCTCAACCACGTCCCCGCAGGTGTGAAAGATGCAAGTGACAAGAAGATTTTAGTTGATATGTTATTCTGGGCGGTGGACAACCCTGCTCCTGCGAATTATTTGCTTATTTCCGGAGATAGGGACTTCTCGAATGCCCTGCATCAGCTGCGCATGAGAAGGTACAACATTCTTCTCGCTCAACCACTAAAAGCTTCGTCGTCCCTCACTGCTGCTGCTAGGAGTGTGTGGCTCTGGACTAGCCTTTCTGCCGGTGGGCCACCACTATCCAGTGGCAGCTCGTCAAACATTGCAAGTAATACCCAAAGCTTTAGTTCTGAAAGGGTTCAAAACCGTGTTTCTGAACCGTCTCAACCAAGATTCAAAGAAAAATACACCAACTGCGATGCAAGCCAATTTCCGGAGAGTAAGACTAAGAACAATCATTGCTCTAATCCGGAACTTCCACAGGCAAAGTTGTTTCCCAGGGCTCCCCATGAATTCTTTTGTAATAAGCCCAACATCGCAACTATTAGTTCTGCACTTAGTCTTCCAAGCCACCAAGACCACTCAAAAAGCAGTGGTAGTAACTCTAGTGGTGGAATTCCTCATGATTCACAGAATAGCTTTTTGAGGCAAAACAACCTCCATGATCATCAGGAATCTAGACAAGATTATAGAATAAGTACTAGTCAGTCGCCTAATGTTGTCAGCTTAACTACATCAACAGAGCATAATCCACATGCCAGCCAAGCATCGTGTTATGAGAATGTGGACAAGGGGTCTTCTCGTAATTGTGAACAGTCTAAAACTTCTTTGTCCAGCTTCATCCCTAATACCAGTTCTAGCGATACCTGGGGAGCTAAATTTCTACGACCACCTTCTGAGTACGACCAACATCTTATAGGCTGCATTCTGTTAACTTTAGACACCCTGAAGGCTGAAAAGGTTATGCCTACTCACGGAAATATTTCTGATTGCATTCGATATGGAGATGTGAGATATCAGACAATGGATGTCAGGAAGGCTTTAGATTGTGCAATAGAGCACGGAATGGTAGTAAAACAAAGCATAGGTTCATTGAATTTTTATGTTAACAAAAATGGGAAACTCTGGAAGTGTGTGAACCCTATAGGTGGTTATCCTAATGATTTCTCAGACGCAACATGGGCTAGAATACAGCAATTCCTTTCTTCACCAACTGGAAAATCGTCAATTTTGGCATCCCGTTGCAGATATGAAGCATCGCTTATTCTTAGGAGATCATGCATGGAAAAGGAGGTTTTAGGTGATGTACTTAAGATTCTGGAGATGATAATCTCGGTCAAGAAGTGGATTATACATAACCATTCCGGGGAGTGGCAGCCGATTACTATTACACTTGAGCAGAGTTGA 1644 0.4592 MTAEATTSKGTVLARSLKEAEMQYSSAKVSVWWDIENCPVSRGCDAHSIAKNISSALVRMNYCGPVSISAYGDTXRIPSSVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPLKASSSLTAAARSVWLWTSLSAGGPPLSSGSSSNIASNTQSFSSERVQNRVSEPSQPRFKEKYTNCDASQFPESKTKNNHCSNPELPQAKLFPRAPHEFFCNKPNIATISSALSLPSHQDHSKSSGSNSSGGIPHDSQNSFLRQNNLHDHQESRQDYRISTSQSPNVVSLTTSTEHNPHASQASCYENVDKGSSRNCEQSKTSLSSFIPNTSSSDTWGAKFLRPPSEYDQHLIGCILLTLDTLKAEKVMPTHGNISDCIRYGDVRYQTMDVRKALDCAIEHGMVVKQSIGSLNFYVNKNGKLWKCVNPIGGYPNDFSDATWARIQQFLSSPTGKSSILASRCRYEASLILRRSCMEKEVLGDVLKILEMIISVKKWIIHNHSGEWQPITITLEQS* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0957 547 MobiDBLite consensus disorder prediction 264 298 - -
Amo16g0957 547 Pfam NYN domain 28 164 IPR021139 GO:0004540
Amo16g0957 547 PANTHER LIMKAIN B LKAP 19 206 IPR024768 GO:0005777|GO:0010468|GO:1903231
Amo16g0957 547 Gene3D - 20 171 - -
Amo16g0957 547 MobiDBLite consensus disorder prediction 180 237 - -
Amo16g0957 547 CDD PIN_limkain_b1_N_like 28 152 - -
Amo16g0957 547 MobiDBLite consensus disorder prediction 309 339 - -
Amo16g0957 547 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 278 537 - -
Amo16g0957 547 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 19 206 - -
Amo16g0957 547 PANTHER LIMKAIN B LKAP 278 537 IPR024768 GO:0005777|GO:0010468|GO:1903231
Amo16g0957 547 MobiDBLite consensus disorder prediction 180 240 - -
Amo16g0957 547 MobiDBLite consensus disorder prediction 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0957 Amo-Chr16 15395730 15397985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0957 20 209 C2H2 Transcription Factor Family AT5G61190 70.408 2.65e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0957 - - aip:107646579 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0957 16 15395730 15397985 Amo16g0957 16 15395730 15397985 ECH
Amo16g0957 16 15395730 15397985 Amo06g0083 06 847825 850084 hybridization