Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0955 ATGGAAGCTAGATTTGGTACTGAAGCTCTTCAATTCTATGCTATGGGTGGGTCCTCAGTGGGGAAGAGGTCCATGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTATTCATAGCTAGGCCTTTGAATCCTGGGCCTGAACACAGGCAATTCTTCCCTGCTGGTACCAGGATCCCTGTGGCCGGGGGTCCTTCCAACTCTAATAGCTCATCCTCGTGTTCTGATGAGGTAGATCTCGGGATTCGTGGAGGGAACAAGGAAGGGGATAAGAAGAGGAGGGTTGTTGTSCTGGAGGATGATGCTTTGAATGAGGAATCTGGTACTCTTAGCTTAAAGCTCGGTGGTGGTGTTGGCGGGCATGGTGGTGCCCAAATTGGTAGCTGGGAAGGAGTGAACGGGAAGAAGAGCAGAGTAGCTGGAGGCAATTCGAATCGGGCTGTTTGCCAAGTGGAGGATTGTGGTGCAGATCTCAGCAGTGCTAAAGATTATCACAGGCGCCATAAAGTTTGTGAGATGCACTCCAAGGCCACTAAGGCACTTGTGGGAAATGCAATGCAACGATTCTGCCAACAATGTAGTAGGTTTCACATGCTCCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCACAATAAGCGGAGGAGGAAAACAAACAACGATGCTGTTCCTAATGCAACTTCACTAAATGATGATCAGACAAGTAGTTACCTGCTGATAAGTTTATTGAAGATACTTTCAAACATGCATTCTGACAGGTCAGATCAGACCACCGATCAGGATCTGCTGACTCACTTGCTTAGGAGTCTTGCTAGTCAAAATGGTGATCAAGGGGGTAAGAACTTGTCAAACCTTTTGGCTCAACCAGAGAATTTGTTGAAAGAAGGGAGCTCATCTGGGAAGTCTGAGATGGTTTCTACTTTATTCTCAAATGGATCTCAAGGCTCTCCATCTGTAATACAACAGCATCAAGCAATTTCTGTAGCTGAGCTCCAACATCAGGTGATGCATGCACATGATATTATGCCTACTGATCAACAAATCATGTCTTCTACAAAGCCCAGCGCTTCAAATAGTCCTCCAACTTACTCAGAAGCCCGAGACAGTACTGCTGGACAGACAAAGATAAACAATTTTGATTTGAATGACATATATATCGACTCAGATGATGGCGTAGAAGATATTGAAAAGCTGCCTGTCTCTGCAAATCTCGGTACTAGCTCTCTTGAATACCCATGGACACAACATGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGCAACTCAGATTCTGCATCTGCTCAGTCCCCTAGTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAAGAACCAAATGATTTCCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGACATGGAAAGCTACATCCGGCCTGGTTGTATTGTTCTGACCATTTATCTGCGCCAGTCTGAAGCTATGTGGGAGGAACTTTGCTATGATTTGACTTCCAGCTTGAGTAGGCTTCTGGATGTCTCAGATGTTGATTTTTGGAGGACTGGATGGGTTCATATCCGGGTGCAGCATCAGCTAGCATTTGTTTTCAATGGTCAGGTTGTCATAGATACATCCTTACCTTTCAAAAGCAACAATTACGGCAAGATTCTTAGTGTTAGTCCAATTGCTGTACCAGCATCAAAAACAGCTCATTTTTCTGTCAAGGGTATCAACCTGAATCGCCCGGCCACAAGGTTATTGTGTGCTTTAGAAGGRAATTATCTATCTTGTGAAGATGCTCATGAGTCGATGGATCAAGGCTCCAAGGAGCTTGAAGAGCTTCAATGTATCCAATTTTCATGTTCTGTCCCCGTGATAAATGGAAGAGGATTTATTGAGATTGAGGATCAGGGTCTGAGCAGCAGCTATTTTCCTTTCATTGTTGCTGAGGAGGACGTTTGCTCTGAAATCTGTGTGCTTGAGCCCTTAATAGAAGTAAGTGATATTGATCCCGATAATGAAGGGACTGGAAAAATTAAAGCCAAAAACCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAGATCACGGATGGTTCACTTGAACTCTAGTGTAGAACTCTTTCCACTAAAACGATTCAAGTGGCTCATGGAGTTCTCTGTGGACCGTGATTGGTGTGCTGTAGTGAAAAAACTACTGAACCTACTGCTTAGTGGAACAGTGGGCACAGGAGATCACCAATCACTTCATCTCGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTAAGGAGAAATAGCAGGCAATTGGTGGAGCTACTTTTGAGATATGTTCCCGAGAATATTTCTGACAAACTAGGGCATGAAGACATGGCTCTGGTTGGCGGAGAGAATCAGAGTTTCTTGTTTAGACCCGATGCTGCGGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCAGAGGAAGTACTGGATGCATTAACCAACGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGCGCTCGTGATAGCACAGGCTCGACCCCCGAGGATTATGCACGTTTACGAGGCCATTATGCTTACATTCACCTGGTGCAGAAGAAAATCAACAAGAGGCAAGGAGGGGCTCATGTTGTGGTTGACATTCCAAGCAATCTGACTGGGTTCAATACAAACCAGAAGCAAAATGAGACGACCAGCTTCGACATTGTTGGAAAGGCTGAAGGAAGAAGTGCCCAAAAGCAGTGCAAACTATGTGATAATAAGTTGTCTTGTAGAGCTGTAGTAGGCAAGTCTCTGGCATACAGACCTGCTATGCTGTCGATGGTGGCTATAGCAGCAGTGTGTGTCTGTGTCGCGCTTCTGTTTAAGAGCTCGCCGGAAGTTCTGTACGTGTTCCGCCCATTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 3024 0.4534 MEARFGTEALQFYAMGGSSVGKRSMEWDLNDWKWDGDLFIARPLNPGPEHRQFFPAGTRIPVAGGPSNSNSSSSCSDEVDLGIRGGNKEGDKKRRVVVLEDDALNEESGTLSLKLGGGVGGHGGAQIGSWEGVNGKKSRVAGGNSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNATSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLASQNGDQGGKNLSNLLAQPENLLKEGSSSGKSEMVSTLFSNGSQGSPSVIQQHQAISVAELQHQVMHAHDIMPTDQQIMSSTKPSASNSPPTYSEARDSTAGQTKINNFDLNDIYIDSDDGVEDIEKLPVSANLGTSSLEYPWTQHDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQSEAMWEELCYDLTSSLSRLLDVSDVDFWRTGWVHIRVQHQLAFVFNGQVVIDTSLPFKSNNYGKILSVSPIAVPASKTAHFSVKGINLNRPATRLLCALEGNYLSCEDAHESMDQGSKELEELQCIQFSCSVPVINGRGFIEIEDQGLSSSYFPFIVAEEDVCSEICVLEPLIEVSDIDPDNEGTGKIKAKNQAMDFIHEMGWLLHRSQLRSRMVHLNSSVELFPLKRFKWLMEFSVDRDWCAVVKKLLNLLLSGTVGTGDHQSLHLALSEMGLLHKAVRRNSRQLVELLLRYVPENISDKLGHEDMALVGGENQSFLFRPDAAGPAGLTPLHIAAGKDGSEEVLDALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGGAHVVVDIPSNLTGFNTNQKQNETTSFDIVGKAEGRSAQKQCKLCDNKLSCRAVVGKSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEYGTS* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0955 1007 MobiDBLite consensus disorder prediction 416 453 - -
Amo16g0955 1007 SUPERFAMILY Ankyrin repeat 779 891 IPR036770 -
Amo16g0955 1007 Gene3D - 750 902 IPR036770 -
Amo16g0955 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 15 1006 - -
Amo16g0955 1007 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Amo16g0955 1007 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Amo16g0955 1007 Pfam SBP domain 150 223 IPR004333 GO:0003677
Amo16g0955 1007 SUPERFAMILY SBT domain 148 228 IPR036893 GO:0003677|GO:0005634
Amo16g0955 1007 MobiDBLite consensus disorder prediction 63 78 - -
Amo16g0955 1007 MobiDBLite consensus disorder prediction 61 87 - -
Amo16g0955 1007 MobiDBLite consensus disorder prediction 300 326 - -
Amo16g0955 1007 MobiDBLite consensus disorder prediction 353 377 - -
Amo16g0955 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 1006 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0955 Amo-Chr16 15324915 15331796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0955 1 1007 SBP-box Gene Family AT3G60030 55.621 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo16g0955 SBP 9.4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0955 16 15324915 15331796 Amo16g0955 16 15324915 15331796 ECH