Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0945 ATGGAGGATTGTTGTGCCGTTTGCGCCGAGCCCTTGGAATGGGTTGCTTATGGACCTTGCATGCACCGCGATGTCTGCTCCACGTGCGTCTCTCGCCTCCGATTCATATGCCACGATCGCCGTTGCTGCATCTGCAAGACCGAATGCGACACCGTATTCGTTACCAAGGCTCTAGGAGACTATACACGGATGATTAATGATTTTTCATCCTTACCCTCCGACCCAAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATATTTCGATGATATGGACCATTACAGGATGATCAAGGCTATGTGCAGGCTCTCCTGCAGTGTATGTGACAGGATGGAGGAGCAACCACATGATGCCTCAAAGCGCCGGCAGAGGTTTAGGAATATAGAGCAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCTTATGTGTAGCTTATGTTTGGAGGGGAGGAAGGTATTTATATGCGAGCAAAAGCTTTATACCAGAGCACAATTGAATCAGCATATAAGCACAGGTGATTCAGAAGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAGTTCTGTAGAACCCCATTTTATGGGGATAATGAATTATACACACACATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAATATGAATACTATAAGAATTATGATGACCTGGAGATCCATTTCCGTAATGAGCACTTCTTATGTGAAGATGAAGCTTGCCTTGCTAAGAAGTTTATTGTGTTTCAATCTGAAGCAGAAATGAAGAGGCATAATGCTATTGAACATGGAGGGCGAATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGGCATGTACAGTGACAATCGATTCTATACCGACCAGCTTTCGGTATAAGCGTAATGATCAAGACCAACGCCGCGGAAGAGGCCGCTCCTTTCGTCGTGATTTTTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGCCTGCAGATGGCTAATGCAGCGGAAACATTTCATGATCCATCATCTTCAAGTAGTGGGCAAGTTGCAGTTGATGATGGTAATGCTGATGTTGATTCTATTATTCAGCCATTTGAATCAGTAGCTACATCGGGATCTGAAGCATCTGCACGATACCTCCAAGCCTTAGGACCTAACTCGAGGAATGCAGCACTAGCAGATTCATCATTCCCTCCACTCCCACTAGCTTCCAGCAATGACCAGCAAAGGTCCAAACAGGAGTTGGAAGGTTCATCCAGTAATACCATGGCAGCACGCTTGCGTCGGCATGGGAACAGAAATGTTTCTGTAATTAATGCTGGTAATGCTTGGCCTGCACCAGGTCGTAATTCTACCCAAGCTAGACTGCAATCAAATGCTGCTCCTGGAGTGCCACGTAATTCTGGTCAGATGAAGACAGCAAATAACATTGGACCTTCACCCTCAACTTATGCTAGTTCTATTCAACCTACACCCAGAACTGCCCTTGCACAATCATCTGTTGGTTCTTCGCGGGATACACGTGATAACGGAAGAATGGTTCACTCTGCATCTGCTCCAAATCTCATTGAGAGCAACCCCATTGAAGCTTCAATTTCCGAGTTTCCTCCTGTTTCTGCTTCACTAGTGAGCAAGTTATCTGCAAGCACTCAGACTCCGTTGAATGTGGAAAATGTTCAGTCTGCTAACAAGTCATTGGTTGAAAAGATTCGTGGAGCTCTTGATTTTGATGAAGATAGATACACTTTGTTTAAAGACATATCTGGTCAATATCGTCAAGGCACACTTGATACGGAGACATATCTGGACTGTGTGCAGCAGTTTGGTTTGTCTCATCTTGTACCCGAAATGGCTAATTTATTGCCTGATCCTCAGAAGAAGGAAGAGCTCATTTTGTCGTACAACAGTAGTTTGCAAAGGAATGCTTTTCCAGAAAATGGATGGGTCCATGGTGGTTCTGGCATACCGTCTAAAGGTAGTAATGCTTCCAAGAAGGGTAAAGGTAAGTCTGTAGATGGTAGTGGTAGTAACTCCACAAATAGATTAGCAGATAGCTTCTTAAGCACAGTACATCAACTACAGTCAAGCTATAAATCTTCAGAAGAGAATTTGGAGGTGCTATCAAGGGGTGATTATCGAACTAACAAGGGCAAGTCAAAAATCAATCAGCAGATTGATACCAATTCGGGAAATCAACCTTTGAGAATCAGTGGGCAGACAGAGGCATCGAGTGGAATTTTATCAAATCAGAAAAAGGAGGATGCTGGTGTTGGCAGTAAACAACGTAAAAAAACTTCCAAATTTCTTAGAGTGCGACTTGGCGATGGTTCTGCTTCAGCCCTTCTTGATTTTGATAACTCTCAGACTGAGCCAGATCCTGGAACAGACCCTTTGCCAGGTAACAAGAATGACTCCGGAGGACTGCCTGTGCGAGGTGTTTGGCGAAATGGGGGAGGCCAGAGGCTCTTCAACTGA 2511 0.4468 MEDCCAVCAEPLEWVAYGPCMHRDVCSTCVSRLRFICHDRRCCICKTECDTVFVTKALGDYTRMINDFSSLPSDPREGKVGSYWYHEDTNAYFDDMDHYRMIKAMCRLSCSVCDRMEEQPHDASKRRQRFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRNEHFLCEDEACLAKKFIVFQSEAEMKRHNAIEHGGRMSRSKRNAALQACTVTIDSIPTSFRYKRNDQDQRRGRGRSFRRDFSENQLSMAIEASLQMANAAETFHDPSSSSSGQVAVDDGNADVDSIIQPFESVATSGSEASARYLQALGPNSRNAALADSSFPPLPLASSNDQQRSKQELEGSSSNTMAARLRRHGNRNVSVINAGNAWPAPGRNSTQARLQSNAAPGVPRNSGQMKTANNIGPSPSTYASSIQPTPRTALAQSSVGSSRDTRDNGRMVHSASAPNLIESNPIEASISEFPPVSASLVSKLSASTQTPLNVENVQSANKSLVEKIRGALDFDEDRYTLFKDISGQYRQGTLDTETYLDCVQQFGLSHLVPEMANLLPDPQKKEELILSYNSSLQRNAFPENGWVHGGSGIPSKGSNASKKGKGKSVDGSGSNSTNRLADSFLSTVHQLQSSYKSSEENLEVLSRGDYRTNKGKSKINQQIDTNSGNQPLRISGQTEASSGILSNQKKEDAGVGSKQRKKTSKFLRVRLGDGSASALLDFDNSQTEPDPGTDPLPGNKNDSGGLPVRGVWRNGGGQRLFN* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0945 836 MobiDBLite consensus disorder prediction 791 836 - -
Amo16g0945 836 MobiDBLite consensus disorder prediction 729 762 - -
Amo16g0945 836 MobiDBLite consensus disorder prediction 402 433 - -
Amo16g0945 836 MobiDBLite consensus disorder prediction 657 690 - -
Amo16g0945 836 MobiDBLite consensus disorder prediction 720 776 - -
Amo16g0945 836 SMART c2h2final6 251 280 IPR013087 -
Amo16g0945 836 SMART c2h2final6 220 250 IPR013087 -
Amo16g0945 836 SMART c2h2final6 196 219 IPR013087 -
Amo16g0945 836 SMART c2h2final6 108 144 IPR013087 -
Amo16g0945 836 CDD RING-HC_ZNF598 5 46 IPR041888 -
Amo16g0945 836 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Amo16g0945 836 PANTHER EBR1 1 835 - -
Amo16g0945 836 MobiDBLite consensus disorder prediction 452 525 - -
Amo16g0945 836 PANTHER ZINC FINGER PROTEIN 598 1 835 IPR044288 GO:0061630|GO:0072344
Amo16g0945 836 MobiDBLite consensus disorder prediction 452 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0945 Amo-Chr16 15108531 15112685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0945 1 831 C2H2 Transcription Factor Family AT3G62240 52.601 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0945 K22381 - gmx:100799878 1242.64