Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0935 ATGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAACGAAGACAAAGGAAACAAGGTGGCAAAGAAACCAATGCCGGCAGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCCCACCTGAGGAGGATGATTCAGAAAAGGATGAAAAGAAACTGGTAAAACAGAAGGGTCGTGAAAGAAAGCATAAGGCCGGGGCGGATTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTAGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTCGGATTAAGCATTATCCAGATAATGTTCATAAGCAAGATACAATCTCAAAAGAACCAGCTCTCAATGTTCAGAGAAAATTTTTTGTTCCAAAGAAAGTGCCAATTGAAAAAACTGAATCTGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATGCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGGTTGGCTGTGTTGAGATTGTCGAAACGCAACAGAACACAGAGGCTCCAGCAACCCATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGGTCATAGACATAAAAGGCATGCCGGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGATGCTCCATTCGGTGTCCGAGAAGGTGGTTACTGTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAAGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTCGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACTGGAAAGACGCGGCTGACCATCGTGTTCCTTCAGACATGCTTGGAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGATAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACTTCAGGAAAAGAGCACCTAGCTGCATGCAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCAGATGGTGAAGCTGTATTCTTGGTTCAAACAACCAAGTATTCTTGGAATCAGCTACAGTTTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAGAAGCTTGAAGGAGAATGCTGCCACAGGGGTCATGGGAAAAATCCTGCCTGAAATTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTGCTTTTCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTTTCAGTTGGGAACCAGTTTCTTCATTCAGAACTGAGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATGTTCCTGGTTTGAAAGACTGCGTGGTGAAGGGGGATAACATGGTGCGCCATGGGAAACTGAGAGACTTGTTTGGTGACTGTGTGATGCAGCCAAATGACTGTGATTTGATTGATAATTTGGATCCTAAAATTTCCTGA 1878 0.4382 MNVAKKPVEGCSSKKNEDKGNKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSPPEEDDSEKDEKKLVKQKGRERKHKAGADCESSYKEREQHRVTTNPSRPKEAPLIELLAECFRIKHYPDNVHKQDTISKEPALNVQRKFFVPKKVPIEKTESEKERDMLWEEMDALLRLGEVDSLVGCVEIVETQQNTEAPATHCKHKFVHDEETGIYCILCHWMVIDIKGMPVSEYPREGSRKKLLSDGPNGLCFDDAPFGVREGGYCNKEGTVWDLIPADTKQNLYAHQLESFEFLWKNLAGTMELPKLKSCDSNSTGGCIISHAPGTGKTRLTIVFLQTCLEVFPDCHPMIIAPDSLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHLAACSKVGGSAPSQEDIQMVKLYSWFKQPSILGISYSLFQRLTGLKRDRSLKENAATGVMGKILPEIPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPCFSDTIPPELKKFCQRRLMQEKKESKGFSWEPVSSFRTENLNDENIKQLKQLMDPFVHVHKGSILQKNVPGLKDCVVKGDNMVRHGKLRDLFGDCVMQPNDCDLIDNLDPKIS* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0935 625 Pfam SNF2-related domain 304 583 IPR000330 GO:0005524|GO:0140658
Amo16g0935 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 513 IPR014001 -
Amo16g0935 625 Gene3D - 269 567 IPR038718 -
Amo16g0935 625 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 14 589 IPR044567 GO:0080188
Amo16g0935 625 MobiDBLite consensus disorder prediction 57 105 - -
Amo16g0935 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 568 IPR027417 -
Amo16g0935 625 MobiDBLite consensus disorder prediction 10 24 - -
Amo16g0935 625 SMART ultradead3 283 525 IPR014001 -
Amo16g0935 625 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 14 589 - -
Amo16g0935 625 MobiDBLite consensus disorder prediction 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0935 Amo-Chr16 14924877 14927554 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo16g0935 SNF2_N 5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0935 K10875 - aip:107627890 818.15