Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0904 ATGAGTGGACACTCTTTTGGACTGGCAGTGTATGTCCACTCTCTAAGACAATTTTATGGAAAAACCGTAGATTTCATATTTGGGAACGCCAAGGTTGTGTTCCAGAGCTGGGGAAGTGGCGCCGCGGCAACGTATCTCTGGAGGCCATGGAAGGAGTATTCGAGAACGGTGTACGTGCAAACCATGATTGATGGTGTGGTTGACGGTGCAGGGTGGCGTCCATGGGACAGAGATTTTGCGTTGACCACTTTGTATTATGCTGAGTTTAATAACAGTGGGGTGGGGTCCAGTATTGCGAATAGGGTGACGTGGCAGGATTACCATGTGATTAACGCAACGGATGCTGCTAACTTTACTGTTTCGAATTTCTTGCTTGGAGATAATTGGTTACCCAAGACTGGAGTGGCCTACACCAATGCCTTTATTTAG 429 0.4732 MSGHSFGLAVYVHSLRQFYGKTVDFIFGNAKVVFQSWGSGAAATYLWRPWKEYSRTVYVQTMIDGVVDGAGWRPWDRDFALTTLYYAEFNNSGVGSSIANRVTWQDYHVINATDAANFTVSNFLLGDNWLPKTGVAYTNAFI* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0904 142 Pfam Pectinesterase 42 127 IPR000070 GO:0030599|GO:0042545
Amo16g0904 142 PANTHER PECTINESTERASE 42 139 - -
Amo16g0904 142 PANTHER PECTINESTERASE 10 35 - -
Amo16g0904 142 Gene3D - 36 142 IPR012334 -
Amo16g0904 142 PANTHER PECTINESTERASE 10 35 - -
Amo16g0904 142 PANTHER PECTINESTERASE 42 139 - -
Amo16g0904 142 SUPERFAMILY Pectin lyase-like 5 138 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0904 Amo-Chr16 14401436 14401864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0904 10 142 Carbohydrate Esterase AT4G02330 46.154 5.49e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0904 K01051 - gmx:100800971 187.578