Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0902 ATGAGTAGGCGTGGGAGCAGAACAGTCTACGTTGGSAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGATTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCGCCAAGGCCTCCTGGCTATGCATTTGTGGAGTTTGAAGACTATCAAGATGCTGAGGATGCGATTCGAGGGCGTGATGGATATGATTTTGATGGCCACCGCTTGAGGGTGGAGCCTGCACATGGAGGGCGTGGTCATTCATCTTCGAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGACGTGGGGTATCTAGGCGCTCGGAATATCGTGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGCGAAAGGCCGGGGATGTTTGCTTTTCCCAAGTTTTCCATGATGGAAGAGGAACTACTGGGATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTTCGGAATGCATTTTCCAGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGCAGCCGCAGTCGTAGCTACAGTCGGGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCTTCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCCCGTTCTCGTTCAAGATCAAGGTCTCGTTCTTTATCAGGATATGGATACTTGCGGCAAACTGGAAAATGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCGTGCAATTCAATTTGTTGTAGAGATTGGGAACCAAGGAGATCATGGATTGCTATTTAGAGCTGGATGTCTTGTGTATTAA 924 0.474 MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSRSLSGYGYLRQTGKWKLGTWWDLVQLRAIQFVVEIGNQGDHGLLFRAGCLVY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0902 307 MobiDBLite consensus disorder prediction 73 107 - -
Amo16g0902 307 MobiDBLite consensus disorder prediction 206 220 - -
Amo16g0902 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Amo16g0902 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Amo16g0902 307 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 256 - -
Amo16g0902 307 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 256 - -
Amo16g0902 307 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Amo16g0902 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Amo16g0902 307 Gene3D - 2 109 IPR012677 -
Amo16g0902 307 SMART rrm1_1 8 78 IPR000504 GO:0003723
Amo16g0902 307 SMART rrm1_1 112 185 IPR000504 GO:0003723
Amo16g0902 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Amo16g0902 307 MobiDBLite consensus disorder prediction 186 258 - -
Amo16g0902 307 MobiDBLite consensus disorder prediction 221 258 - -
Amo16g0902 307 CDD RRM2_SF2_plant_like 111 186 - -
Amo16g0902 307 MobiDBLite consensus disorder prediction 73 108 - -
Amo16g0902 307 Gene3D - 110 188 IPR012677 -
Amo16g0902 307 CDD RRM1_SF2_plant_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0902 Amo-Chr16 14392930 14397499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0902 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 4.57e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0902 K12890 - gmx:100789847 341.658