Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0888 ATGAAGTTCTGCAAGAGATACCAGGAGTACATGCAAGGCCAGGAGAAGAAACTTCCTGTTGTTGGCTTCAAGAAGCTCAAGAAGATGTTGAAGCGCTGTTCCCGACGACACTCTTCATCATCATCATCTCGATCATCTTCTTCTCTTTCACTCAACACCTGCCCAGATCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCGCTTCTCACTGAAATGTCAGCCATAGTAGGCTGCTTCAACCAGCGGGCTCAGAAATTGCTGGACCTGCACCTCGCTTCTGGTTTCAGAAAGTACTTCTTCTGGTTCAAAGGCAAATCACAAGGGAGCCACAACGCTCTCATTCAAGAAGGAAAAGACCTTGTTACTTATGCACTCATAAACGCTGTTGCAATCAGAAAAATACTGAAGAAATATGATAAGGTTCATTATTCCAGGCAAGGACAAATGTTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTGCAAAGTCCTTGGCTTTGTGAGCTTATGGCCTTCCACATCAATCTGAGGGAAACTAAGGTCCAGTCTAGGAAGGCACATGCTTTCTTTGATGGATGTTCTCTCTCATTTAAGGATGGAAAACCAGCACTCACTTGTGAGCTACTTGATTCCATCAAAATTGATATAGACTTGACTTGTTCTATATGCCTGGACACAGTGTTTGATCCAGTTTCTCTAACCTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCTGCTGCATCAGTATCTATTGTTGATGGAATTAAGGCATCCGATTCTAAGAAAAAATGTCCTTTGTGCCGAGAGAGTGGAGTGTATGAAGGAGCTGTGCGCTTGGAAGAACTAAATATACTGTTGGGCCGAAACTGCCAGAAATACTGGGAGGAAAGGGCTCAATCAGAAAGGGTAGAGAGGCTTAAACAGATAAAGGAACACTGGGAATCGCAATGCAGGTTATTCGTAGGTGTCTAA 981 0.4393 MKFCKRYQEYMQGQEKKLPVVGFKKLKKMLKRCSRRHSSSSSSRSSSSLSLNTCPDQCPVCDGTFFPSLLTEMSAIVGCFNQRAQKLLDLHLASGFRKYFFWFKGKSQGSHNALIQEGKDLVTYALINAVAIRKILKKYDKVHYSRQGQMFKSQVQSMHKEILQSPWLCELMAFHINLRETKVQSRKAHAFFDGCSLSFKDGKPALTCELLDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGIKASDSKKKCPLCRESGVYEGAVRLEELNILLGRNCQKYWEERAQSERVERLKQIKEHWESQCRLFVGV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0888 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 323 IPR013083 -
Amo16g0888 326 MobiDBLite consensus disorder prediction 33 52 - -
Amo16g0888 326 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Amo16g0888 326 CDD SPX_BAH1-like 2 149 - -
Amo16g0888 326 Pfam Zinc finger, C3HC4 type (RING finger) 219 272 - -
Amo16g0888 326 ProSiteProfiles Zinc finger RING-type profile. 222 271 IPR001841 -
Amo16g0888 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 326 IPR033326 -
Amo16g0888 326 SUPERFAMILY RING/U-box 215 274 - -
Amo16g0888 326 SMART ring_2 222 270 IPR001841 -
Amo16g0888 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 326 - -
Amo16g0888 326 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0888 Amo-Chr16 14157338 14160290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0888 219 271 C3H Transcription Factor Family AT4G28270 41.379 4.25e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0888 K16275 - gmx:100797432 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0888 16 14157338 14160290 Amo16g0888 16 14157338 14160290 ECH