Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0880 AGAGACAGAGTCACAAACCTCTTTCGTTCTTTCTCTCTCCGATTCTCTTTTCATTCGGCGAACTCTGTTCGGATCAGAGAAACCAACAGAAGGGAATCTCCGACAGCCGCCGTCACCGTCACCGTCACCGTCGTAATCATGGTCGAAACCAGACGCAGCTCTTCCGTTTCGTCTTCTTCCTCCAAGCGCTCTCTTCCTTCGCCTTCTTCTCCCAACGCTAAACGATCAAAGGTGACCCAGGACGCCGCATCAGTTGTTCTTCCCTCTGAGGAGATTCTCGATGCTGCCAACGAATCTGGGAATGGATCTGGTGACTCGGACCTACGTTCCTCTGATCTGCAAGATACGAGTTCGTTGAAGGAGGTTGTGAACGTTTGCGATGCAGACAAGTCTCCTTCTCCGCCCGTTGAAGAGGTGGTCATCGCCTTGCCGGAGTCTTTGGACGCCAAAGAAGCCGACAAGACCGAGGTGGCTGGCGCCGCCGCCGCCGCCGTAGATGAGCTTCCTCGTTCAAAGAAACGCTCCGCTAATTCTGCCATGGCAGGACCGAAGGTCACTTGGGGGATGCTTATCTCTCAGTGCTCAGAGAATCCTCATCTCACCTTGTGTGAACCTCTGTTCACTGTGGGTCAAGGCCGTCAGTGCCATTTGTGGCTTAAAGATCCAGCTGTTAGTAATGTTTTGTGCAAGTTGAGCCACATTGAGCATGGTGGTTCATCTTTTGCGTTACTAGAAATCACAGGGAGTAAAGGTACTGTTCAAGTTAATGGCAAGATGTATCGAAAGAATGCCCGAGTGGTTTTGAGCGGAGGTGATGAGGTGGTCTTCAACATTTATGGCAAGCATGCTTATATATGTCAGCAGCTCACCAATATTAATGCTACTACTGGTGTGCCTTCTCTGAGTATTTTAGAAGCCCAAAGTGATCTAATAAGAGGAATGCAGATTGAAGCTAGATCTAGTGACCCTTCAACTGTTGATGGAGCATCGATGTTGGCCTCTTTGTCTAATGTTCACAAAGATATATCAATCATCACACCTTCTGGTAAAACTTGCAATAATGTCCAACAAACTGCTGGAGTTTCATCATTATCTCCTGGCAATGAGGATGGCATTCCAGATAATACAGTGAAGGATGGTACTAGCATTAATGAACCAGCAGGAGTTTTTTCCGCTGAGAAAACTGTTCCTGCATCCTCTACAACTGTTGAGAAAAATTCTAATGTTGATAGCATGGCAAGTTCTACTCTGAATGCAGATGTTGGGAAGACAAGTGCGGGTAGTGATCAATTACGACCATTACTGCGGATGTTTGCTGCCCCTTGTCCTGAATTAGATAATATTTACAAGATATCTGAAGAGAAAAGTGAGTTAAGAGAACTACTTCTTAAGTATCTTGATTCCCCGACAGTATTGGCATCTTCTAAGCAGCAAGCACTTAAGGACAGTTTGAAACAAGGAATTCTTAGTCATGAAGATATTGATGTGTCTTTTGAAACTTTCCCATATTATCTAAGTGATACGACAAAGAATGTTTTGATTGCTTCTACTTATATGCATCTGAAAAGCAAAGGCTTTGGAAAATATGCTTCAAACCTCTCTTCAGTGTCCCCACGGATATTATTATCTGGTCCAGCAGGCTCCGAAATATACCAGGAAACTTTGTCCAAGGCACTTGCTAAGCATTTTTCTGCCAGCATACTAATTGTGGATTCTCTTTTGCTATCTGGTGGCACATCATTAACAGAAGTGCACAATGCTAAAGAAAGTGCAAAGCCTGAAAGAACACCTGCAGTTGCTAAGAGAAGTACTCAGGTTTCCACATCACAGCACAAGAAATCAGTCTCTAAACTAGTCTCTAGTGTTGATGGTCAAATTATTGGTGGATCCACATTCTGTTCTCCAGGGTGGGTGAAACTAGAGACTAATGTCAGGTCATCAAAAGCCACTATTCTTAAAAATGGTGATCGAGTAAAATTTATTGGTCACATTCATTCACCCTCATCGCCACAAACTAGAGAGACTACTAATCAGTTACTGCGGGATGGTTCTGGAGGAGATGACTTTGACAAGATCGCAGTTAATGATATTTTTGAGGTTGTCTCCAATCAGAGTAAAAGTGCTGCACTAGTTGTTTTCATTAAAGATGTTGAGAAGGCGATCATTGGTAATTCAGACATTTTGAAGAGTAAACTTGAAAGCTTACCACAAAATGTTGTTGTAATTGGCTCACATACTCAGCTCGATAGTCGAAAGGACAAGACCACACATGCTGGCATTCTGTTAACAAAGCTTGGGGGCAATCCAGCAGCATTACTTGATCTTTCTTTCCCGGATAAGTTCACTAGATTGCTTGATAGGAGCAAAGAAAGTCCCAAAGCAGTAAAGCAACTTACTCGCCTTTTTCCGAATAGGGTGCCAATACAACTTCCTGAGGATGAGCTTTTGCTTTCTGATTGGAAGCAGCAGTTGGAACGAGATATTGAGACTATGAAGGCTCAATCCAATACTGTCAGCATTCGAACAGTTCTCAACCGAATTGGACTGGAATGTCCTGAACTTGAGACACTCTGCATCAAAGATCAAGCTCTAACAGCAGAAAGTGTGGAAAAAACCATTGGCTGGGCTATAAGTCACCATTTTATGCATTCGGCTGAGGGTTCTGTCAAAGACTGTAAGCTTGTGATATCTGCAGAAAGCCTTAAGTATGGGCTGAACATTCTACAGGGCATTGAAGGTGAAAACAAGAATTCAAAGAAATCTGATATTGGGGTCACTTTTGATGATATTGGGGCTTTAGAAAATGTGAAGGACACCTTGAAGGAGTTGGTCATGCTTCCTCTACAGAGACCTGAACTCTTTAGCAAAGGACAGTTGGCTAAGCCCTGCAAGGGAATACTGCTCTTTGGGCCCCCTGGTACTGGAAAGACAATGCTTGCGAAGGCTGTAGCAACCGAGGCTGGAGCCAACTTTATTAACATTTCAATGTCTAGCATTACTTCAAAGTGGTTTGGGGAAGGAGAAAAATATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAGATTGCCCCAAGTGTTATTTTTGTCGATGAGGTCGACAGTATGTTAGGAAGACGTGAAACTCCTGGCGAACATGAGACTATGCGTAAAATGAAGAATGAGTTCATGATGAATTGGGATGGTCTGCGAACAAAAGATAAAGAGCGTGTACTTGTTCTCGCTGCTACAAATAGGCCCTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGAAGATTTATGGTTAATTTGCCAGATGCTCCAAACAGGGAAAAAATTCTGAGAGTCATCTTAGCAAAAGAAGATTTGGCACCGGATGTTCATTTGGAAGAAATAGCAAATATGACTGATGGATATTCGGGGAGTGACCTAAAGGAGAGAAGTGTAGCATTGGCCGAGAACAGACCCTTACCTGGATTATGTAGCAGTGCTGATGTCCGTTCCTTAAAGATGGATGATTTGAGATATGCACAAGAGCAGGTGTGTGCGAGCTTCTCGTCAGATTCGTTGAATATGAACGAGCTACTTCAATGGAACGACCTTTATGGAGAAGGTGGATCAAGGAGAACGAGATCTTTGAGCTATTTCATGTAA 3633 0.4352 RDRVTNLFRSFSLRFSFHSANSVRIRETNRRESPTAAVTVTVTVVIMVETRRSSSVSSSSSKRSLPSPSSPNAKRSKVTQDAASVVLPSEEILDAANESGNGSGDSDLRSSDLQDTSSLKEVVNVCDADKSPSPPVEEVVIALPESLDAKEADKTEVAGAAAAAVDELPRSKKRSANSAMAGPKVTWGMLISQCSENPHLTLCEPLFTVGQGRQCHLWLKDPAVSNVLCKLSHIEHGGSSFALLEITGSKGTVQVNGKMYRKNARVVLSGGDEVVFNIYGKHAYICQQLTNINATTGVPSLSILEAQSDLIRGMQIEARSSDPSTVDGASMLASLSNVHKDISIITPSGKTCNNVQQTAGVSSLSPGNEDGIPDNTVKDGTSINEPAGVFSAEKTVPASSTTVEKNSNVDSMASSTLNADVGKTSAGSDQLRPLLRMFAAPCPELDNIYKISEEKSELRELLLKYLDSPTVLASSKQQALKDSLKQGILSHEDIDVSFETFPYYLSDTTKNVLIASTYMHLKSKGFGKYASNLSSVSPRILLSGPAGSEIYQETLSKALAKHFSASILIVDSLLLSGGTSLTEVHNAKESAKPERTPAVAKRSTQVSTSQHKKSVSKLVSSVDGQIIGGSTFCSPGWVKLETNVRSSKATILKNGDRVKFIGHIHSPSSPQTRETTNQLLRDGSGGDDFDKIAVNDIFEVVSNQSKSAALVVFIKDVEKAIIGNSDILKSKLESLPQNVVVIGSHTQLDSRKDKTTHAGILLTKLGGNPAALLDLSFPDKFTRLLDRSKESPKAVKQLTRLFPNRVPIQLPEDELLLSDWKQQLERDIETMKAQSNTVSIRTVLNRIGLECPELETLCIKDQALTAESVEKTIGWAISHHFMHSAEGSVKDCKLVISAESLKYGLNILQGIEGENKNSKKSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFSKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRETPGEHETMRKMKNEFMMNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRFMVNLPDAPNREKILRVILAKEDLAPDVHLEEIANMTDGYSGSDLKERSVALAENRPLPGLCSSADVRSLKMDDLRYAQEQVCASFSSDSLNMNELLQWNDLYGEGGSRRTRSLSYFM* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0880 1210 Coils Coil 821 841 - -
Amo16g0880 1210 Pfam ATPase family associated with various cellular activities (AAA) 966 1095 IPR003959 GO:0005524|GO:0016887
Amo16g0880 1210 SMART AAA_5 962 1099 IPR003593 -
Amo16g0880 1210 SUPERFAMILY SMAD/FHA domain 190 279 IPR008984 GO:0005515
Amo16g0880 1210 CDD AAA 964 1097 - -
Amo16g0880 1210 MobiDBLite consensus disorder prediction 587 607 - -
Amo16g0880 1210 Gene3D - 1098 1172 - -
Amo16g0880 1210 MobiDBLite consensus disorder prediction 95 114 - -
Amo16g0880 1210 ProSitePatterns AAA-protein family signature. 1069 1088 IPR003960 GO:0005524|GO:0016887
Amo16g0880 1210 Gene3D - 924 1178 IPR027417 -
Amo16g0880 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 924 1140 IPR027417 -
Amo16g0880 1210 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 676 1210 - -
Amo16g0880 1210 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 666 - -
Amo16g0880 1210 MobiDBLite consensus disorder prediction 99 114 - -
Amo16g0880 1210 MobiDBLite consensus disorder prediction 53 81 - -
Amo16g0880 1210 CDD FHA 207 276 IPR000253 GO:0005515
Amo16g0880 1210 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 676 1210 - -
Amo16g0880 1210 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 47 666 - -
Amo16g0880 1210 Gene3D - 186 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0880 Amo-Chr16 14103118 14112193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0880 925 1174 Calmodulin-binding Proteins AT3G56690 37.500 9.53e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0880 - - adu:107492402 1738.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0880 16 14103118 14112193 Amo16g0880 16 14103118 14112193 ECH