Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0865 ATGGCAACAAACAGATTCGTGTGTGAGATATGCAACAAAGGATTCCAGAGGGACCAAAACCTTCAACTACACAGGAGAGGACACAATTTACCATGGAAGCTAAGGCAAAGAACAACCACAGAGGTCAAGAAGCGTGTCTACGTCTGCCCTGAGCCCACGTGCGTTCACCACAACCCATCACGTGCTCTTGGCGACCTCACCGGCATCAAGAAACACTTCAGCCGCAAACATGGCGAAAAGAAATGGAAGTGTGACAAGTGTTCCAAACGCTACGCTGTTCAATCTGATTGGAAGGCTCACCTCAAAACTTGCGGCACTCGCGAGTATAAGTGTGATTGCGGCACCATCTTTTCCAGAAGAGACAGTTTCATTACTCATCGTGCTTTCTGTGATGCTTTGACCGAAGAAAATAACAAACTTTCTTCCACCCATCAGGGTTTGTTAACAACTGGCATGCCCCCAAGTCAGATTCCATTAACCACTTCTTCTTCTTCATCAGATCAATTATTCATCACTGATCCACCACTTATCATTCCAACAACAACTCCTTTCAATAACTCCATCTTCTCATCGACAACTACTTCTTCTTCTTGTTCTTCTTCAACGCTTCAGCTGAGTTCTAGTGGCTTCAACAATGTTATTCTTTCTAATCCATCTTCTTCATCATCGCCTCACATGTCTGCAACTGCTCTGTTGCAGAAAGCAGCTCAAATGGGTGCAACTGCAAGTAACAACAGCATGAATTATTCACCCATGATGCAGAAAAGCTTCTCCATGGGAACAACTACCATGGCTGGAGTAGTTAGTGGTGGCCATGATGCTGCATTTACAAACCAATTGTTTCAGAAAGAAATCGTCTCATCACAACTGTTTGATGCAAACACTACTACTAATAGTGGTACTAATAATGATATGGGAATGTATGGTCAAATGTTCATGGGAACAATTACTAGTAATAATAATAATAATAATAATAATAATGGGTTGATGAAGATTAGTAGTGATGTGGAACAAGAGATTAGTGATGATGATAATAATAATAATAACAATACGATAATGGTGGAGGCATCAAGGTTTGGAGGAGGGAGTGGAAGGGATGATGATATTGCAACTGTTCATGATTTCTTGGGAATTGGTGGAGCTTCATCAATTGCTTCAACAGCAACAGTGAGTTTGCATGAATCAGAGCAACAGCAAAGATTAGTAGCAGAGACATTGAATCAGCAGAGGTTGCAGATTATGAACCACTTTCATCACCATATTCCTCCTCATCATGCTGCAGATTCAGCTATTGACAAAACTATGTGGGATGTTTGA 1317 0.4146 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPEPTCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKLSSTHQGLLTTGMPPSQIPLTTSSSSSDQLFITDPPLIIPTTTPFNNSIFSSTTTSSSCSSSTLQLSSSGFNNVILSNPSSSSSPHMSATALLQKAAQMGATASNNSMNYSPMMQKSFSMGTTTMAGVVSGGHDAAFTNQLFQKEIVSSQLFDANTTTNSGTNNDMGMYGQMFMGTITSNNNNNNNNNGLMKISSDVEQEISDDDNNNNNNTIMVEASRFGGGSGRDDDIATVHDFLGIGGASSIASTATVSLHESEQQQRLVAETLNQQRLQIMNHFHHHIPPHHAADSAIDKTMWDV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0865 438 Gene3D Classic Zinc Finger 40 130 - -
Amo16g0865 438 Pfam Zinc-finger of C2H2 type 6 28 - -
Amo16g0865 438 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 405 - -
Amo16g0865 438 Gene3D Classic Zinc Finger 2 29 - -
Amo16g0865 438 SMART c2h2final6 6 28 IPR013087 -
Amo16g0865 438 SMART c2h2final6 82 102 IPR013087 -
Amo16g0865 438 SMART c2h2final6 47 77 IPR013087 -
Amo16g0865 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Amo16g0865 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 405 - -
Amo16g0865 438 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Amo16g0865 438 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0865 Amo-Chr16 13904949 13906265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0865 1 247 IDZ Gene Family AT3G50700 55.743 8.63e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g0865 zf-met 0.0031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0865 - - adu:107492404 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0865 16 13904949 13906265 Amo16g0865 16 13904949 13906265 ECH
Amo16g0865 16 13904949 13906265 Amo06g0343 06 4899762 4901126 hybridization