Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0863 ATGGACTTCCCGAACGACGATTTCCTTGAGCTTCCGATTGGGAACTCCGCCGAGTCGTTGCAGAGGTTCTTGGCTTCGCAGAGAGACCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAAGAAATGGCAGCTGGTGCTCTTTCAATAAAGATCGGTAAAAGACCAAGGGATTTATTAAATCCGAAGGCCGTTAATTACATGCAATCTGTTTTTTCTATTAAGGATGCAATTAGCAAGAAAGAATCTCGAGAGATTAGTGCTTTATTTGGTGTCACAGTAACACAGGTGCGTGACTTTTTCAATGGTCAACGCTCTAGAGTGAGGAGATTTGTTCTGTCGTCAAGGGAGAAAGCATTAAAATCTAATTCTTGTGAAGAACCTCATGATGAGCTAATAAACTCTGATCCTATGAGACCAATAAATCCAGCTCCCTTAAATTCTATCATGCCCAGCAATGCTGAAGGCGCATCTTGTTCAACGCAGGATGCAGCTTTGTCTGACCTAGATGACTTAGATAAGAAATTCGTTGATAATATTTTTAGTCTAATGGAGAAGGAGGAGTCATTTTCTGGGCAGGAGAAACTGATGGAGTGGATATTGACAATACAGAACTTTTCAGTGTTGTTGTGGTTTCTGACCAGAGGAGGTGTGATGATTTTAGCAACTTGGTTGAGTGTAGCAGCTGTTGAAGAGCAAACAAGTGTCCTCCTTCTTATCTTGAAAGTTCTTTGTCATTTGCCTTTACACAAAGCCCTTCCTACACACATATCAGCTATATTGCCGTGTGTTAATAGATTGCGGTTCTACAGGACATCAGATATATCAAACAGGGCAAGGGTTTTGTTATCGAAGTGGAGCAAATTATTAGCAAGGGACCAAGCAATGAAGAAACCCAATGGCTTTAAACTTTCTAATGATGGTCAAAAAGATAAAATGTTCTCTCAAAGTATTGGTCAAATTATGGGCTCTGAATCATGGGATTCAAATATGAATGTCCATGAAGACATTCTTGCTCTCTCTAATGATCATTCAGATAATTTCAGGAAACTGGAATCTTCCCAAGCTGTGAAATTGTTGCCATCCAGCTCAGATGATTCTAATAAGAAGCTTGCTCTTGGTGTTTCTTCATCTCAATCAAATGGCCCTAGAGAGCGCAGAAAAGTGCAACTGGTGGAACAGCCAGGCCAAAAATCAGTGACCAGAAGCCCACAGGCGACAAGAGTAGCCCCTATAAATCAAGGTCGTCCTATGTCTGCTGATGATATACAGAAAGCAAAAATGCGTGCTTTATTCATGCAGAGTAAGTATGCAAAAAATGGGTCTTCCAAGGAAAATAAAAATGTGAAGATCGATGGTTTGCATAAGCATCAGACGAATCAGGCCAGTATTGCAGCTTGCTCTGCTAAAGTTCCTGTTCCACCCAGAATTGAAGATGATAAAAGGACCTCATTGCTTCCCTCTAGTAAGGCCACTAATAGGCTGGAAACATCTTATTCTAAACCTAGAATGGATGCAAATGAACCAGTGTGGGAGAAGTGCAAGCGGGTGCAAATCCCATGGAAGACACCAGCAGAAGTGAAACTCAGAGATACATGGAGTGTTGGTGCTGGTGAAAATAGCAAAGAGGTTGATGTCCAGAAAAACAGAAACCGCAGGGAGAAGGAAACTATTTATCAGACTGTCCAAGAGATACCATCTAATCCCAAAGAGCCATGGGACCTCGAGATGGACTATGATGACACTTTGACACTGGAAATTCCCATTGAACAGCTGCCGGATGTTGATGGTGCAGAACTAGCATTTGCCCCTGATGAGGTTGCAACTCATGCTGTTCAAGGGGTAGCCACACCGTCTTCAACCAGTAATGTAGCTGATACTGCTCAACCTGACTTGGAACTGCTAGCAGTGTTACTTAAAAATCCAGACTTAGTATTTGCCTTAACTTCGGGACAAGGTGGTAGCATCCCAAGTGAGGAAACCGTGAAGGTACTTGACATGATCAAGAGAGGTGATATGAACTTGGGTACACATGATACAAATAATGGAAATGGCATTAGTGCAAAGCCCACAGAGATGGTGGAAGTTTCACTCCCCTCACCAACTCCTTCAAGTGATCCAAGAACGGTGCGTGACTTTGAGTTCATACTACAACTATTTGTCAAAGATGTTATCATGTTTGATATCTTCCATTGCAGTTCCATGCACACTCCACTTAGCCATCTCAGCTCGAAATGGGTTTTTCAATCGTGGCCCAAATTGAAGTTCCTAATTGAGTTATTTCTATTTCCTAGTTCTTCCCCATTTCCCCGAGGGAGTTATGGTCAAGTTGTTATGTTCCACGGTGTGCTTCGATGA 2403 0.4253 MDFPNDDFLELPIGNSAESLQRFLASQRDLFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFNGQRSRVRRFVLSSREKALKSNSCEEPHDELINSDPMRPINPAPLNSIMPSNAEGASCSTQDAALSDLDDLDKKFVDNIFSLMEKEESFSGQEKLMEWILTIQNFSVLLWFLTRGGVMILATWLSVAAVEEQTSVLLLILKVLCHLPLHKALPTHISAILPCVNRLRFYRTSDISNRARVLLSKWSKLLARDQAMKKPNGFKLSNDGQKDKMFSQSIGQIMGSESWDSNMNVHEDILALSNDHSDNFRKLESSQAVKLLPSSSDDSNKKLALGVSSSQSNGPRERRKVQLVEQPGQKSVTRSPQATRVAPINQGRPMSADDIQKAKMRALFMQSKYAKNGSSKENKNVKIDGLHKHQTNQASIAACSAKVPVPPRIEDDKRTSLLPSSKATNRLETSYSKPRMDANEPVWEKCKRVQIPWKTPAEVKLRDTWSVGAGENSKEVDVQKNRNRREKETIYQTVQEIPSNPKEPWDLEMDYDDTLTLEIPIEQLPDVDGAELAFAPDEVATHAVQGVATPSSTSNVADTAQPDLELLAVLLKNPDLVFALTSGQGGSIPSEETVKVLDMIKRGDMNLGTHDTNNGNGISAKPTEMVEVSLPSPTPSSDPRTVRDFEFILQLFVKDVIMFDIFHCSSMHTPLSHLSSKWVFQSWPKLKFLIELFLFPSSSPFPRGSYGQVVMFHGVLR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0863 800 MobiDBLite consensus disorder prediction 374 421 - -
Amo16g0863 800 MobiDBLite consensus disorder prediction 501 515 - -
Amo16g0863 800 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 725 - -
Amo16g0863 800 MobiDBLite consensus disorder prediction 374 400 - -
Amo16g0863 800 SMART HOX_1 68 130 IPR001356 GO:0003677
Amo16g0863 800 Gene3D - 68 125 - -
Amo16g0863 800 MobiDBLite consensus disorder prediction 489 516 - -
Amo16g0863 800 CDD homeodomain 69 125 IPR001356 GO:0003677
Amo16g0863 800 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Amo16g0863 800 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 725 - -
Amo16g0863 800 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0863 Amo-Chr16 13888345 13895203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0863 521 722 Homeobox Transcription Factor Family AT4G02560 50.495 1.86e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0863 - - adu:107492506 1358.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0863 16 13888345 13895203 Amo06g0345 06 4909799 4917742 hybridization