Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0860 ATGAAAGCAATCCAATTCCGTACGCCTAGGTTGTACTATGACACATTTCATCCCACAATCCACTTCCAGATACCATCATCATCATTATCACTCCCTAAACCAATGATCTCCCGCTGCAGCATAGTCCAATCTCACCACCCCAATTTCACAATCTCATACCTGATTGACTCATGTGGTCTCTCTCCAGACACTGCTGCTCTTACTTCCCAAAAGCTTCACCTTCCTTCTGCTGAAAGACCAGACTCTGTTCTCACCCTTCTCAGGGAGCATGGTTTCACAGATACCCAGATTTCAAACCTCATCAGAAAACGCCCATTGCTCCTCTTAGCAAACCCAGATATCCTCTTGCCAAAGTTTCAATTTTTCCTCTCCATTGGGATTTCCAATACCAACCTCGCAAGAACCCTAACCGCTGACCCAACCCTTTTGACCCGGAGCTTGGAGAAACAGATCATACCCTCTTACAATTTCCTCAAGAGTGTGTTGATTTCTGATGAAAAGGTTGCAGCTTCATTGAAGCGCACATCTTGGGTCTTCCTCGAGGATCACAAGAAGAACCTCGTACCAAACCTCAATCTCCTGAAAGAGATGGATGTTCCTGAATCATGTGTTACGCTGTTGCTGACTCATTTCCCGGAGGCATTGATGCAGAAAAAGGAAAACTTTGCAAAGCTTTCTAAGGAGATTAAAGAAATGGGGTTTAATCCAAAAAAGACAACTTTTGTGTTGGCCATTCATGTGCTCTCAGGTGAAGGTAACAAATCCATATATAACCGCTGTTACGAGGTTTATAAGAGGTGGGGTTGGTCAGATGATGACATCCTTACGGCATTCAAGAAGCACCCACATTGTATGATACTTTCAGAGGATAAGATAATGAAGACAATGGATTACTTGGTGAATAAGATGGGTTGGCCTTCAGGGATGATTGTTAGGTGCCCAGTGGTGTTGTTTTTCAGCTTGGAGAAGAGGATTAAACCTAGGTGCTCTGTTGCTAAGGTTTTGTTGATGAAGGGATTGATTAAGAGGAAGTTGAGCTTGTCCACTTTGCTGTTGCCTGATGAGGACAGTTTCTTGGAGAAGTATGTGGTCAAGTATGAGCTGCAGGTGCCTCAGTTGTGGAGTGTGTATCAGAAAAAGTTGGATTTTATGAGTGTGATTTGA 1164 0.4356 MKAIQFRTPRLYYDTFHPTIHFQIPSSSLSLPKPMISRCSIVQSHHPNFTISYLIDSCGLSPDTAALTSQKLHLPSAERPDSVLTLLREHGFTDTQISNLIRKRPLLLLANPDILLPKFQFFLSIGISNTNLARTLTADPTLLTRSLEKQIIPSYNFLKSVLISDEKVAASLKRTSWVFLEDHKKNLVPNLNLLKEMDVPESCVTLLLTHFPEALMQKKENFAKLSKEIKEMGFNPKKTTFVLAIHVLSGEGNKSIYNRCYEVYKRWGWSDDDILTAFKKHPHCMILSEDKIMKTMDYLVNKMGWPSGMIVRCPVVLFFSLEKRIKPRCSVAKVLLMKGLIKRKLSLSTLLLPDEDSFLEKYVVKYELQVPQLWSVYQKKLDFMSVI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0860 387 Pfam mTERF 84 236 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 Pfam mTERF 206 358 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 30 380 - -
Amo16g0860 387 SMART mt_12 307 338 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 SMART mt_12 98 128 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 SMART mt_12 169 200 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 PANTHER CGI-12 PROTEIN-RELATED 30 380 IPR003690 GO:0003690|GO:0006355
Amo16g0860 387 Gene3D Transcription termination factor 3, mitochondrial 144 381 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0860 Amo-Chr16 13822094 13823402 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo16g0860 mTERF 3.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0860 K15032 - ahf:112805356 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0860 16 13822094 13823402 Amo16g0860 16 13822094 13823402 ECH