Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0857 ATGGAGCTTTACGGTCGCAACCCGGGGAGGAACGGGTCGAACCCGGGGAATCAGCCCGAATGGCGCTCGCCGGGCCCCGATACTGGCCTCGAAGAATCAATGTGGCAGTTGACGCTGGCTAGCAGCGAATCGTACCCGGAGCGACCCAGTGCTCCGAATTGCGTGTATTACATGCGAACCGGGTACTGTGGATATGGTGCAAGGTGCCGTTACAATCACCCTCGTGACCGTGCTGCGGTTGCTGCGGCTGTAAGAGCAACAGGGGAGTACCCGGAAAGAGCGGGGGAACCTCCATGTCAGTATTATCTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCTTTGAGCCAAGCACCACTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTGACTTGTAAATTCCATCATCCTGCTGCTGGCACATCATTGCCGGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGACCAATACGGGGGAGCATCCACAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGGCTGGTTCGTACGTTCAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGAGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCTACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCACTGCCCTCTTCTATTGGCCCCTCAGGCAGTGGTCAGAAGGAGGAAGTTTTTCCTGAACGTCCTGGCCAACCTGAATGCCAATACTATCTTAAAACAGGGGACTGTAAATTTGGATCGGCTTGTCGATATGATCATCCACGGGATAGGGGTGTGACACGACCACTTCTCAGCCCCATTGGTCTTCCTCTTCGTCCGGGGGTTCAACCTTGTGCATTTTATTTGCAAAACGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTCGGGCCTGTGAGATATAGTCCATCGACATCTTCCCTGACTGATGCACCAGTAACTCCATACCCCGTTGGGTCTTTGCTGTCTACCCTGGCTCCTTCCTTAACATCCTCAGAGCTTCGGCCTGAATTGATGTCGGGGTCCAAAATGGAATCCTCCTTTTCAACCAGAATGCCTTCTTCTGGAAATAGTCCCACTACCTCTGTCAGTTTAATCTTTTCACAAGGTGGAACTGTCTCACTATCTGATGTGCAACTCTCAACTCAGAGTTCTGCCCCTCTAAGCACTAGCCGAAGCACCAGATAG 1398 0.5021 MELYGRNPGRNGSNPGNQPEWRSPGPDTGLEESMWQLTLASSESYPERPSAPNCVYYMRTGYCGYGARCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPAAGTSLPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLAGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSIGPSGSGQKEEVFPERPGQPECQYYLKTGDCKFGSACRYDHPRDRGVTRPLLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPFGPVRYSPSTSSLTDAPVTPYPVGSLLSTLAPSLTSSELRPELMSGSKMESSFSTRMPSSGNSPTTSVSLIFSQGGTVSLSDVQLSTQSSAPLSTSRSTR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0857 465 MobiDBLite consensus disorder prediction 402 433 - -
Amo16g0857 465 Gene3D - 293 375 - -
Amo16g0857 465 Gene3D - 43 125 - -
Amo16g0857 465 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Amo16g0857 465 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Amo16g0857 465 SUPERFAMILY CCCH zinc finger 299 323 IPR036855 GO:0046872
Amo16g0857 465 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 455 - -
Amo16g0857 465 PANTHER PROTEIN PHOSPHATASE RELATED 17 455 - -
Amo16g0857 465 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Amo16g0857 465 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Amo16g0857 465 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Amo16g0857 465 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Amo16g0857 465 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Amo16g0857 465 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Amo16g0857 465 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Amo16g0857 465 Gene3D - 126 175 - -
Amo16g0857 465 SUPERFAMILY CCCH zinc finger 341 370 IPR036855 GO:0046872
Amo16g0857 465 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Amo16g0857 465 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Amo16g0857 465 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Amo16g0857 465 MobiDBLite consensus disorder prediction 1 32 - -
Amo16g0857 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Amo16g0857 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Amo16g0857 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Amo16g0857 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Amo16g0857 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 366 IPR000571 GO:0046872
Amo16g0857 465 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0857 Amo-Chr16 13799645 13804738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0857 1 415 C2H2 Transcription Factor Family AT5G18550 52.064 1.14e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g0857 zf-CCCH 2.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0857 - - lja:Lj5g3v1665190.1 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0857 16 13799645 13804738 Amo16g0857 16 13799645 13804738 ECH