Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0841 ATGGCAGAGTTCTCTTCCGCATCAACTCTTCCAACTCCACCTGAATCTCAAACTAGACTACACTTTGGGAAATTGCAGCACGGGTGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGGTTCACTTAGCGATCCCAAGGAGCGTCATGAACTTGTCAGGCGCGATGTTAAGCAAGTTATATGTTCTATCTGTGATACTGAGCAAGAGGCTGCCAAGGTCTGTGCTAACTGTGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTTTATGATGATATTACAGAGAAAGGACAGTTCCATTGCGACGAATGCGGGATTTGTAGGGTTGGTGGTCGTGATAATTTCTTCCACTGTCCGACRTGTGGCTCTTGCTATTCAGTGARCTTGCAAGGCAACCACCCGTGTGTGGAGAACTCAATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGYACCACAATTATGACTTGTGGACACACAATGCATATGGATTGCTTTTATGAAATGGCAGAGCAAAATCAGTATCGCTGTCCTATATGCTCAAAGACAATTTTTGATATGTCTCGGAACTGGGAACATTTAGATCAAGAGATTGAAGCTGTTCCCATGCCTGAGGAATATAATTTTGAGGTTTCTATTCTGTGCAATGATTGTAACAATACAAGCAGGGTTTCCTTTCACCTATTTGGTCACAAATGCAGAAACTGTRGTTCGTATAACACCCGCAGAATTTCAGCACCAGAAAGCTAG 828 0.43 MAEFSSASTLPTPPESQTRLHFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMGSLSDPKERHELVRRDVKQVICSICDTEQEAAKVCANCGVNMGEYYCEICKFYDDITEKGQFHCDECGICRVGGRDNFFHCPTCGSCYSVXLQGNHPCVENSMKSFCPVCYEYLFDSIKGTTIMTCGHTMHMDCFYEMAEQNQYRCPICSKTIFDMSRNWEHLDQEIEAVPMPEEYNFEVSILCNDCNNTSRVSFHLFGHKCRNCXSYNTRRISAPES* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0841 275 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 21 270 IPR031109 GO:0008270|GO:0016567
Amo16g0841 275 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Amo16g0841 275 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Amo16g0841 275 Pfam CHY zinc finger 29 109 IPR008913 GO:0008270
Amo16g0841 275 SUPERFAMILY RING/U-box 163 213 - -
Amo16g0841 275 Gene3D - 235 273 - -
Amo16g0841 275 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 270 - -
Amo16g0841 275 SUPERFAMILY CHY zinc finger-like 26 98 IPR037274 GO:0008270
Amo16g0841 275 Pfam Zinc-ribbon 211 268 IPR039512 -
Amo16g0841 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 234 IPR013083 -
Amo16g0841 275 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Amo16g0841 275 Pfam Zinc finger, C3HC4 type (RING finger) 164 206 - -
Amo16g0841 275 ProSiteProfiles Zinc finger CHY-type profile. 22 97 IPR008913 GO:0008270
Amo16g0841 275 SMART ring_2 164 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0841 Amo-Chr16 13564754 13569736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0841 27 272 C2H2 Transcription Factor Family AT3G18290 42.292 6.99e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0841 K10144 - gmx:100818374 461.84