Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0840 ATGGCAGAGCTAAGTGCGGCCGCAACCTTCACACCCAGCGATGAAGAACTCATTCATTTCCTTTCCGACAAGGTGAAAGGCCAATCAATGGACGAGGACGCCGCCATCAACATCCACGAATGTGAATACTTGTACGGCCGCAACAAGAACCCTTGGGACATTTGGCGGGACTTCGCCGGCGACGTTGATGCCGGCAGGACCGCCCTTTTCTTCTTCTCTCCCACCAAAAAGCACCATTCCACAGCCTCTCGCCCCATCGGAGCCGGCGTCTGGGAAGCTGAAGCCGAAACCATTGACGGCGAAAGCATCGTTGGCAAGGGCAAGAACCGCCGTATTGGGACCAAGAAATGTTTCGTCTTTGACAAGAGTGGCACCTCCTACGATGGTGCATGGATCTTGCATGAATACACTCTTCATGGATCCTCGCTCCACACTAATACTTCAGTGGATCATAGCTATGTTATATGCAAATTGATAAAGAATGTAGAAGGTGAAGCTCATCCAGTTGAGGTGCAGTTTGGAGACAAAAGAAAAAGGCACGGTCAATCTGCCACCACCAGCGGCGTTCAAATTGATGTTAACGCTCCTCATTCATATAGGAACACTAAAGAGCAAGAGGTCCAATTCATACCAAATGAACTTGGCAGGCGAATGTTGTTGGAAATGTTTGAGGAACCTCATCAGAAACCTCATGCAGCTGCAAGGGGGAACAAGAAGAGGTGGAAAAGGCATCTAATTATTGCATAA 747 0.49 MAELSAAATFTPSDEELIHFLSDKVKGQSMDEDAAINIHECEYLYGRNKNPWDIWRDFAGDVDAGRTALFFFSPTKKHHSTASRPIGAGVWEAEAETIDGESIVGKGKNRRIGTKKCFVFDKSGTSYDGAWILHEYTLHGSSLHTNTSVDHSYVICKLIKNVEGEAHPVEVQFGDKRKRHGQSATTSGVQIDVNAPHSYRNTKEQEVQFIPNELGRRMLLEMFEEPHQKPHAAARGNKKRWKRHLIIA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0840 248 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Amo16g0840 248 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Amo16g0840 248 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 9 188 - -
Amo16g0840 248 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Amo16g0840 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 188 - -
Amo16g0840 248 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0840 Amo-Chr16 13552871 13554476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0840 1 170 NAC Transcription Factor Family AT5G24590 30.556 7.38e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo16g0840 NAM 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0840 - - ahf:112756623 457.988