Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0831 ATGGACGCTGATGGAGTCACCGCCTCTTCCTCTCCAAACGCTGCTGACGAAGGTGTGAATAATTATAAAAAAGATGGTGATGAGTTGTATGAGAGAGTGTGGCGAGCATGCGCGGGAGAATGTGTATATATCCCCCGTGCCGGAGATAAGGTGCTGTACTTCCCTCAGGGCTACTTAGAACAGGTTGCTTCATTCACTCAGCATCAGCAAGATGGTCACGTGGATATTCCCGTGCATAATCAACCTTCTAAGATCCTGTGCCGGGTTGTGTCTGTTCAGTTAAAGACTGAAGCTTCCACAGACGAGGTTTTTGCTCAAGTTACTCTACTTCCAGAGTCCAAGCAAGATGAACTTAGTTCGAAGGACACAGACACAGCTCAGATACCCAGCAGATCTTCTGTATACTCCTTTAGCAAGATACTTACTTCATCAGACTCTGGTGCTCATGGCGGATTCTCTATTCCCAAGAAGCATGCTTATGAATGCTTCCCCCCTCTGGTTGACATGACTCTTAAACCCCCAGCACAAGAGCTTGTTGCAAGGGACTTGCATGGGTACGACTGGCGCTTCCGACATATATTTCGTGGTCAGCCAAGACGAAACTTACTTACTAGCGGTTGGAGCACATTTTTAAACTCCAAAAAACTTGCTGCTGGAGATACATGCATATTCTTCAGGGGAGAAAATGGAGAACTCCGAATTGGGGTTCGTCGAGCTATGAAACGGCAAAATATTGCATCCCCATCTGCTTCTCTGATATCAGCTCAGAGCATGCAACTAGGAATACTGACTAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTTACTGTATACCACTACCCTCGGACGAATCCCTTTGAATTTATCGTTCCTTTGCAACGCTACATGAAGTCAACTCAAATGAGCTATGCAACTGGTATGAGAGTACAATTGCTGCTTGATGTTGAAGAACCTAGAAAAAGATATGCAGGTACAGTAATCAGTATTGAAGATTTTGATGGCATTAGGTGGCCTGGTTCTGAATGGAGAAGCCTCAAGGTCCAATGGGATGCTACACCGCATGCAGATATGCATCCAGAAAGAGTTTGTCCTTGGTGGATTGAGGCCTTGGACTGTGCCAAGCAGAAACACATTCCTATTCTCCCCGCACCAAAGAAAGCCCGTCCAAATAACCTGCCGTTGCCTGAATCAAGTGGCTTTGTCAAGGATGAGATAATTCGGTATTCCGCTAAGCCTGCAGCTCAGAGACTGGAAAGGGACTTGCAAGGTCAAGACTACAATGATGTAGCTTCTCCACAGGCTGTGCTAAAACAACCATCATCAAAGGTTATTTGTAACTCAAACCTTGGGATTGAGAATCAGCTTCTAATTCCGATTCAAGACCCTGTTCACCAGTGTACTGGAAGCTCAATGTCGTTTCCACATGAAGACTTGTCAACTTCCAGTTCAAATGCGTACTGTCCGGGATCTGAATCCCAAGGATGGCCTTCTTCTGAATCTAAAGATGAAAATGATGTTCCTTTTGGCCCACATAGCAGTTGTACTACATACAAGCTTTTTGGGATTTACTTAACTGATTGCCAATCGGAGCTCCCTTCACCACAATTTTCTGCTTACAGCAAGATTCCAAGTACCATTTCTATTCCTCCAATGTCTCACTCAAGTATTTATGCAACAATCCAGGCAGCAAAACAGTGCGGAAATATTCAAGGTGTTTCCTCAGAGAAAAGATGCAAGAAGTGTCGCTCTGATAATAGTAGAAGTTGCACAAAGGTTCTTAAGCAAGGAACTGCTCTTGGCAGAGCAATTGATCTCACTCGTTTTGCTGGATATGACGAACTCATTTCTGAACTTGACTGGATGTTTGATTTTGGCGGAGGCTTAATTAATGGAAGCAGTGGATGGCATGTGACCTGCATAGACGAGGATGGAGATATTATGCTCCTGGGAGATTTCCCATGGCAGGACTTTCGATCCATGGTGCAAAAGATGATAATACGTCCAAAGGATGCAATTAACAATCCTAGTCCAAGCTCCTCTGCATATCCTGCAAGCATTTAG 2064 0.4482 MDADGVTASSSPNAADEGVNNYKKDGDELYERVWRACAGECVYIPRAGDKVLYFPQGYLEQVASFTQHQQDGHVDIPVHNQPSKILCRVVSVQLKTEASTDEVFAQVTLLPESKQDELSSKDTDTAQIPSRSSVYSFSKILTSSDSGAHGGFSIPKKHAYECFPPLVDMTLKPPAQELVARDLHGYDWRFRHIFRGQPRRNLLTSGWSTFLNSKKLAAGDTCIFFRGENGELRIGVRRAMKRQNIASPSASLISAQSMQLGILTSASHAVATGSMFTVYHYPRTNPFEFIVPLQRYMKSTQMSYATGMRVQLLLDVEEPRKRYAGTVISIEDFDGIRWPGSEWRSLKVQWDATPHADMHPERVCPWWIEALDCAKQKHIPILPAPKKARPNNLPLPESSGFVKDEIIRYSAKPAAQRLERDLQGQDYNDVASPQAVLKQPSSKVICNSNLGIENQLLIPIQDPVHQCTGSSMSFPHEDLSTSSSNAYCPGSESQGWPSSESKDENDVPFGPHSSCTTYKLFGIYLTDCQSELPSPQFSAYSKIPSTISIPPMSHSSIYATIQAAKQCGNIQGVSSEKRCKKCRSDNSRSCTKVLKQGTALGRAIDLTRFAGYDELISELDWMFDFGGGLINGSSGWHVTCIDEDGDIMLLGDFPWQDFRSMVQKMIIRPKDAINNPSPSSSAYPASI* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0831 687 Pfam B3 DNA binding domain 137 239 IPR003340 GO:0003677
Amo16g0831 687 Gene3D - 134 240 IPR015300 -
Amo16g0831 687 Gene3D - 583 675 - -
Amo16g0831 687 Pfam Auxin response factor 266 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo16g0831 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 680 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo16g0831 687 Gene3D - 304 377 - -
Amo16g0831 687 ProSiteProfiles PB1 domain profile. 588 670 IPR000270 GO:0005515
Amo16g0831 687 SUPERFAMILY DNA-binding pseudobarrel domain 125 266 IPR015300 -
Amo16g0831 687 PANTHER AUXIN RESPONSE FACTOR 21 680 - -
Amo16g0831 687 MobiDBLite consensus disorder prediction 483 508 - -
Amo16g0831 687 ProSiteProfiles B3 DNA-binding domain profile. 137 240 IPR003340 GO:0003677
Amo16g0831 687 SMART B3_2 137 240 IPR003340 GO:0003677
Amo16g0831 687 MobiDBLite consensus disorder prediction 483 501 - -
Amo16g0831 687 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g0831 687 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g0831 687 SUPERFAMILY CAD & PB1 domains 590 664 - -
Amo16g0831 687 CDD B3_DNA 136 238 IPR003340 GO:0003677
Amo16g0831 687 Pfam AUX/IAA family 585 673 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0831 Amo-Chr16 13422663 13429270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0831 21 675 B3 DNA Binding Superfamily AT2G46530 39.818 6.05e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo16g0831 AUX_IAA 5.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0831 - - lja:Lj1g3v4764520.2 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0831 16 13422663 13429270 Amo16g0831 16 13422663 13429270 ECH