Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0796 ATGGATATCCATGGTGTGGCAAAGACAGAGAGGAGCCATCAACCTTGCGCAGCTTGTAGGATGCTAAGCCGAAAATGTGACAAGAAATGCCTCCTTGTTTCCTATTTCCCAGCTGACAAAGCGAAGGCAAGGCTTAGAGATCTAGTTTATGGGAGTAGTGGAGCTATTTTTCAGTTGCAAAAGATGATTGAGGAATTGAAAGTAGAGCTAGAATCAATTAGAGCTTGGGTATTTGAGCTGCGACAACAGAAGGGGCACTACTTGTTGATGATGATGATTCATAACCATAATTACAACACTAACACTTTGTCATCGTCAGATCTCATGGCCTTTGATGACTCATCATCAGTTCATCTATAA 360 0.4167 MDIHGVAKTERSHQPCAACRMLSRKCDKKCLLVSYFPADKAKARLRDLVYGSSGAIFQLQKMIEELKVELESIRAWVFELRQQKGHYLLMMMIHNHNYNTNTLSSSDLMAFDDSSSVHL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0796 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 8 40 - -
Amo16g0796 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 41 112 - -
Amo16g0796 119 ProSiteProfiles LOB domain profile. 14 114 IPR004883 -
Amo16g0796 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 112 - -
Amo16g0796 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 40 - -
Amo16g0796 119 Pfam Lateral organ boundaries (LOB) domain 15 42 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0796 Amo-Chr16 12839772 12849468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0796 15 118 AS2 family AT1G07900 25.676 1.08e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo16g0796 LOB 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0796 - - ccaj:109796546 97.8265