Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0791 ATGGAACAGCATCATCTGCCACCGCCCACCAATAACACCCGTGGTGGCACGCGCCACCCTCTCTACCGCGGCGTCAGGAAGCGCCGCTGGGGCAAGTGGGTTTCCGAGATTCGAGAGCCTCGCAAGAAATCCCGCATATGGCTCGGTTCCTTCCCTGTCCACCTCCTCCCGCCGCTCCCCTCCACCTGCTCCGCCAGGGACATCCAGGTCGCCGCCGCCAAGGCCGCCAACTCCGTGAAGGATTCTGTCGCTTCCACCCGCGGTGGTGCCGATGATGAGGATGATTTCTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGTGGTTGCTGGAGCTCTCCGAGTGGGTCGTCGTGGACTACTTCCTCCGGCGACATCACGGCGTGGCCGGAGGTGGAGCAACCCTTCACGGCGTGTCTATGA 429 0.6364 MEQHHLPPPTNNTRGGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVHLLPPLPSTCSARDIQVAAAKAANSVKDSVASTRGGADDEDDFWGEIELPELMDGECGCWSSPSGSSWTTSSGDITAWPEVEQPFTACL* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0791 142 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Amo16g0791 142 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Amo16g0791 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 53 142 - -
Amo16g0791 142 SUPERFAMILY DNA-binding domain 21 52 IPR016177 GO:0003677
Amo16g0791 142 CDD AP2 20 52 IPR001471 GO:0003700|GO:0006355
Amo16g0791 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 53 142 - -
Amo16g0791 142 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 53 - -
Amo16g0791 142 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g0791 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 53 - -
Amo16g0791 142 Gene3D AP2/ERF domain 21 54 IPR036955 GO:0003700|GO:0006355
Amo16g0791 142 SMART rav1_2 21 82 IPR001471 GO:0003700|GO:0006355
Amo16g0791 142 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g0791 142 Pfam AP2 domain 20 51 IPR001471 GO:0003700|GO:0006355
Amo16g0791 142 ProSiteProfiles AP2/ERF domain profile. 21 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0791 Amo-Chr16 12626568 12627080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0791 17 142 AP2-EREBP Transcription Factor Family AT1G01250 48.193 6.15e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g0791 AP2 4.6e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0791 K09286 - gmx:100802036 155.221