Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0785 ATGGAGGTGGGGATGGGGCGCGTGGTGTGGGACGACGACGATAAAGCCACGGTGGCGGCGGTTTTGGGAGCACGCGCTTTGGATTTCTTGGTGACAAACGCGGTATCCAATGAGAACCTGTTAGTGGCAGTTGGGAGCGACGAGACTCTCCAGAACAAGCTTTCCGATCTGGTGGACCGTCCCAACCTCTCGAATTTCAGTTGGAACTACGCCATTTTCTGGCAGTTATCTCAGTCCAAATCCGGCGACTGGGTTCTCGGATGGGGTGACGGTTCCTGCAGGGAGCCCAACGATGCCGAAGAAGGCGGCGGAGGTGGTGTTAGGGGAGGGATTCTGAGTCTCCGAATCGACGACGAGATGCAGCAGAGGATGAGGAAGAGGGTTTTGCAGAAGCTACACACTACGTTCGGTGGCTCCGACGAGGACAATTACGCTTTTGGCCTCGACCGCGTGACGGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCGTTCCCCCGCGGCCACGGTGGCCCAGGTAAGTGCTTTGCGTCCGGGAAGCACCTGTGGCTCTCGGACGCCATGAAATCCAACTCTGAATACTGCGTGCGCTCTTTCTTGGCTAAAAACGCTGGCTTTCAGACTATTATTTTGGTTCCTACCGATTTGGGAGTGTTGGAGTTGGGTTCAGTGAGGACTCTGCCGGAGAATTTTGAGCTCTTGCAGGCCATCAAATCGGTGTTTTCGTCTCAGGCTACAACCACCTACCCCATGGCTAATAGTAAGCCTCTTATGCCATTGACAGTGATGAGTGAAAAGAGGGATGAGAATAATAATGCTCTTTTTCCTGGTTTGGCAATCGGGGACCATACTCACCAGAACAATAACAAGGTTGTTGAGGGAGTGCCAAAGGTTTTTGGAAGCGCTGTGAATTCTGGTAGGTCCCATTTCAGGGAGAAGCTTGCTGTTAGGAAGATGGAGGAGAGGCCTTGGGTACCCCACCACCAACCCAATGGGAATAATAATGCCAATGCCAATGCCATTAACTTCCCCAATGGTCCTCCTCGCAATGGTCTTCATCACGGGTCTGCTTGGGTTGGTGGAGCAGCAGTAGGAGGGAATAGTAATAATAGTAACTGTAATAATCATACTCAAGGTGGTGTGAGGCAGGCTGCTGCTGGTGGCGCTGCTGAGATTTTCGCTCCTAGGTCGTCAGCGAGCAATGTGTCTGCCGAGTTGGCCAATGGTGGTGTGAGGCCGCAGGATTTTAGGATTAGCAGCTATCAACCCCAAAGGCAGGTGCAAATGCAGATTGATTTCTCCGGAGCCACTTCCAGACCTTCTGTGAGGCCTGTGGTTGCTGATTCGGAGCTTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGCAGCCAAGCATGGCTGACGAGAGAAGGCCCAGGAAGCGGGGAAGGAAGCCTGCTAATGGTAGGGAGGAACCCCTCAATCACGTGGAAGCTGAGAGGCAGAGGCGCGAGAAGCTCAACCAGAGGTTCTATGCGCTGCGGTCTGTGGTGCCCAATATATCCAAGATGGACAAGGCGTCATTGCTTGGTGACGCCATTGCCTACATCAATGAGCTCCAAGCGAAGCTCAAGATGATGGAATCTGAGAGGGAGAGACATGGAGGAAGCACTTCTTTTAGGGAGCCGGAGGCAATGCAAAGAGCAGCAGAAAATCACCATGGTGGTGGAAATGCTGATGTGGATATTGAAGCAGCACAGGATGAGGTGATTGTTAGGGTGAGTTGCCCTCTTGATTCTCATCCGGTTTCAAGAGTGATCCAAACATTCAAAGACGCACAAATCAATGTTATTGATTCAAAACTCGCAGCTGCAAATGACACCATATTTCACACCTTTGTAATTAAGTCCCAACAAGGATGTGAACAGCTCACAAAGGACATGTTGATTGCAGCACTCTCCCCAGAATCCAATTCTTTACAGCAATTGTCATCTGTTGGTGGGTAG 1986 0.5146 MEVGMGRVVWDDDDKATVAAVLGARALDFLVTNAVSNENLLVAVGSDETLQNKLSDLVDRPNLSNFSWNYAIFWQLSQSKSGDWVLGWGDGSCREPNDAEEGGGGGVRGGILSLRIDDEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLSDAMKSNSEYCVRSFLAKNAGFQTIILVPTDLGVLELGSVRTLPENFELLQAIKSVFSSQATTTYPMANSKPLMPLTVMSEKRDENNNALFPGLAIGDHTHQNNNKVVEGVPKVFGSAVNSGRSHFREKLAVRKMEERPWVPHHQPNGNNNANANAINFPNGPPRNGLHHGSAWVGGAAVGGNSNNSNCNNHTQGGVRQAAAGGAAEIFAPRSSASNVSAELANGGVRPQDFRISSYQPQRQVQMQIDFSGATSRPSVRPVVADSELSDVEASCKEEQPSMADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMESERERHGGSTSFREPEAMQRAAENHHGGGNADVDIEAAQDEVIVRVSCPLDSHPVSRVIQTFKDAQINVIDSKLAAANDTIFHTFVIKSQQGCEQLTKDMLIAALSPESNSLQQLSSVGG* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0785 661 Gene3D - 477 547 IPR036638 GO:0046983
Amo16g0785 661 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 487 549 IPR036638 GO:0046983
Amo16g0785 661 SMART finulus 490 539 IPR011598 GO:0046983
Amo16g0785 661 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 6 651 - -
Amo16g0785 661 Coils Coil 530 550 - -
Amo16g0785 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 242 IPR025610 -
Amo16g0785 661 Pfam Helix-loop-helix DNA-binding domain 488 534 IPR011598 GO:0046983
Amo16g0785 661 PANTHER MYC 6 651 IPR045084 GO:0003700|GO:0006355
Amo16g0785 661 MobiDBLite consensus disorder prediction 436 495 - -
Amo16g0785 661 CDD bHLH_AtAIB_like 481 546 - -
Amo16g0785 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 484 533 IPR011598 GO:0046983
Amo16g0785 661 MobiDBLite consensus disorder prediction 454 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0785 Amo-Chr16 12479265 12482210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0785 3 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.023 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0785 bHLH-MYC_N 3.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0785 - - adu:107491937 1231.08