Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0756 ATGAGAACATTCTTCTTTTTATTATTGTGTTTGGTGTTATTCATTGCACAACATAGAGTTGAATGTGCACTGTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTATACACAGATGGTTACGGTACGAAGACGGCGGCTCTGAGTACCGCTCTGTTTAACGATGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGTGATGCAAACCAAGTGCCGCAATGGTGCCTTAAGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGTAATCCTCCAAGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACCATTGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAAAGTTGGGTGCAAAAGGAGTGGAGGAATAAGATTTAGCATCAAAGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGACAAGTGTGGGTAAAAGGGTCAGAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACGGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCAAAGTTCAACTCACCAATGGAAGAACCCTCACTGCTTATAATGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCATCTCTAATGTTCAAGTTGAATGTGCACCGTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACACAGATGGTTACGGTACGAAGACGACGGCTCTGAGTACCGTTCTGTTTAACGACGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGTGATGCAAGCCAAGTGCCGCAATGGTGTCTTAGGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGTAATCCTCCAAGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACTATTGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAATTTGGTGTGTAGAAGGAGTGGAGGGATAAGATTTAGCATCAAAGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAATGTGGGTAAAAGGGTCAAAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCATGGTTCAACTCACCAATGGAAGAACCGTCATTGCTTATAATGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCATCTCTAATGTTCAGTTCAACTAA 1458 0.4527 MRTFFFLLLCLVLFIAQHRVECALWQKAHATFYGGADASGTMGGACGYGNLYTDGYGTKTAALSTALFNDGKACGGCYQIVCDANQVPQWCLKGTFITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRKVGCKRSGGIRFSIKGRDYFELVTISNVGGVGEIGQVWVKGSEKNVWEAMSRNWGVNGQSLSYLNGQSLSFKVQLTNGRTLTAYNVAPSNWKFGQSFISNVQVECAPWQKAHATFYGGADASGTMGGACGYGNLYTDGYGTKTTALSTVLFNDGKACGGCYQIVCDASQVPQWCLRGTFITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRNLVCRRSGGIRFSIKGRDYFELVTISNVGGVGEIGQMWVKGSKKNVWEAMSRNWGVNWQSLSYLNGQSLSFMVQLTNGRTVIAYNVAPSNWKFGQSFISNVQFN* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0756 485 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Amo16g0756 485 Gene3D - 246 386 IPR036908 -
Amo16g0756 485 Gene3D - 15 153 IPR036908 -
Amo16g0756 485 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Amo16g0756 485 PANTHER EXPANSIN-A15 5 251 IPR002963 GO:0009664
Amo16g0756 485 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 158 IPR007112 -
Amo16g0756 485 PANTHER EXPANSIN-A15 251 484 IPR002963 GO:0009664
Amo16g0756 485 SUPERFAMILY PHL pollen allergen 387 480 IPR036749 -
Amo16g0756 485 SMART dpbb_1 60 148 IPR007112 -
Amo16g0756 485 SMART dpbb_1 292 380 IPR007112 -
Amo16g0756 485 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Amo16g0756 485 Pfam Lytic transglycolase 292 380 IPR009009 -
Amo16g0756 485 Pfam Lytic transglycolase 60 148 IPR009009 -
Amo16g0756 485 Gene3D - 390 485 IPR036749 -
Amo16g0756 485 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Amo16g0756 485 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Amo16g0756 485 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 400 480 IPR007117 -
Amo16g0756 485 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 275 390 IPR007112 -
Amo16g0756 485 PANTHER EXPANSIN 251 484 - -
Amo16g0756 485 PANTHER EXPANSIN 5 251 - -
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 373 389 IPR007118 GO:0005576
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 428 442 IPR007118 GO:0005576
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 256 271 IPR007118 GO:0005576
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 296 314 IPR007118 GO:0005576
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 466 480 IPR007118 GO:0005576
Amo16g0756 485 PRINTS Expansin/Lol pI family signature 274 292 IPR007118 GO:0005576
Amo16g0756 485 Pfam Expansin C-terminal domain 391 469 IPR007117 -
Amo16g0756 485 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Amo16g0756 485 SUPERFAMILY Barwin-like endoglucanases 250 408 IPR036908 -
Amo16g0756 485 Gene3D - 154 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0756 Amo-Chr16 12061548 12069614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0756 242 484 Expansin Gene Family AT4G01630 72.428 3.92e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0756 - - aip:107648027 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0756 16 12061548 12069614 Amo16g0756 16 12061548 12069614 ECH
Amo16g0756 16 12061548 12069614 Amo19g1351 19 27521743 27524093 PCT
Amo16g0756 16 12061548 12069614 Amo09g0774 09 12979702 12982558 PCT
Amo19g1351 19 27521743 27524093 Amo16g0756 16 12061548 12069614 PCT
Amo09g0774 09 12979702 12982558 Amo16g0756 16 12061548 12069614 PCT