Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0749 ATGGCTTCTTTGATTGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGAACTACACAAACGACCACCGCTTACTACTACTTCTTCTTCTTCTTCCTCTCTTTCCTTGCAATGCTTGGACAGCAAGTCCCACTTCAACAACGTTCTCAGAGCACACCTTTCTACTAACAATGGCAAGGGAGGTTTTAAGCCCACTGTTAGTTTTGTTACTTCTGCCATTGCCACTCCAAATTCTTCGGTCCTCAGCGAAGAAGCATTCAAGGGGATAGGCAGCGGTGATGACTTTGCCGACGACGACGACTTTGCCGGCTTTGGCTCTGAAACCGAAGAGGGATCTTCTGCTGTTAGCTCTGAAGAACTCGACGTTTCCAAGCTTGGCCTTCCTTCGCGCCTCGTTGATACCCTTCACAAGCGTGGGATTTCGCATCTTTTCCCCATTCAGAGAGCGGTGTTGGTACCGGCATTGGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACACTAGCATTTGGGATTCCCATTATTAAAGGCCTTACTGAAGATGAACATTCAAGTTCTCTCAGGCGGTCTGGTCGTCTCCCCAGAGTGTTGGTTCTTGCTCCTACCAGGGAGCTAGCAAAGCAAGTAGAGAAGGAGATAAAGGAATCTGCACCTTATCTGAGCACAGTTTGTGTTTATGGGGGTGTTTCCTATGTTACTCAACAAAGTGCGCTTTCACGTGGAGTTGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTCGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAAGTTGGGTAAAGAAATTGGCTCGAAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGCGATGAAGAAGAAAAGCTTGCAGAAGGGATAAAACTTTTTGCTATATCAGCAACTGCCACTTCAAAGCGAACAATTCTTTCCGATCTTATAAGTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCATTACATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCCCGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCAGGGAAACAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTAGAGCGTGATGTAGGCTGCAAATTTGAATTCATCAGTCCACCCGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGTTGTTGCCACGCTCAATAGGGTTCATCCCGAGTCTGTTGAGTTTTTTACACCGACTGCACAAAAATTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCGTCCCGATCTTTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATAGTAGAAGATACTTCTCTGCAAGATCAGTCACTGGGTTTCTGGCTGAGGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCTGTTTTCGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGAGATACCACCTGGAAACACTATAACCAAGGTTACCAAGTTGCCTGCCTTGCAAGATGATGGACCACCAGGTGATTTCTATGGGAAGTTCTCTGACAGAGATGGTAGTAGCCGAAGAGGTTCAGGTTCTGGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTTAGAAGCTCACGGGGATATGGAGGCCGAGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGCAGTAGAAGTAATAATAAAACTGGCAGTAGCTGGTCTCGAGCTGGAAGATTCAGTGGTGATGATTGGCCAATTGGCGGTAGACGACCATCAGGCAGATCTTCATCATCAGACAGAGGTGGTTTTGGAGGGTCCTGTTTTAATTGTGGGGAGTCTGGGCATCGAGCATCAGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2322 0.4509 MASLIGVSSIYQTPSTTLELHKRPPLTTTSSSSSSLSLQCLDSKSHFNNVLRAHLSTNNGKGGFKPTVSFVTSAIATPNSSVLSEEAFKGIGSGDDFADDDDFAGFGSETEEGSSAVSSEELDVSKLGLPSRLVDTLHKRGISHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHSSSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLFAISATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDSRRYFSARSVTGFLAEVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNREIPPGNTITKVTKLPALQDDGPPGDFYGKFSDRDGSSRRGSGSGSGSRDRRGGFRSSRGYGGRDSDDDFGDSYRRGSRSNNKTGSSWSRAGRFSGDDWPIGGRRPSGRSSSSDRGGFGGSCFNCGESGHRASDCPNKRSFF* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0749 773 CDD GUCT_Hera 558 630 - -
Amo16g0749 773 SUPERFAMILY Retrovirus zinc finger-like domains 734 771 IPR036875 GO:0003676|GO:0008270
Amo16g0749 773 MobiDBLite consensus disorder prediction 708 722 - -
Amo16g0749 773 Gene3D - 106 333 IPR027417 -
Amo16g0749 773 Pfam DEAD/DEAH box helicase 146 319 IPR011545 GO:0003676|GO:0005524
Amo16g0749 773 Pfam GUCT (NUC152) domain 551 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Amo16g0749 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 519 IPR001650 -
Amo16g0749 773 CDD DEADc 133 331 - -
Amo16g0749 773 ProSiteProfiles Zinc finger CCHC-type profile. 753 768 IPR001878 GO:0003676|GO:0008270
Amo16g0749 773 SMART c2hcfinal6 752 768 IPR001878 GO:0003676|GO:0008270
Amo16g0749 773 Gene3D - 743 771 - -
Amo16g0749 773 SMART helicmild6 384 464 IPR001650 -
Amo16g0749 773 MobiDBLite consensus disorder prediction 637 749 - -
Amo16g0749 773 CDD SF2_C_DEAD 344 473 - -
Amo16g0749 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 330 IPR014001 -
Amo16g0749 773 Gene3D - 348 551 IPR027417 -
Amo16g0749 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 66 765 - -
Amo16g0749 773 Pfam Zinc knuckle 752 768 IPR001878 GO:0003676|GO:0008270
Amo16g0749 773 MobiDBLite consensus disorder prediction 102 121 - -
Amo16g0749 773 PANTHER - 66 765 - -
Amo16g0749 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 485 IPR027417 -
Amo16g0749 773 Pfam Helicase conserved C-terminal domain 357 464 IPR001650 -
Amo16g0749 773 MobiDBLite consensus disorder prediction 683 707 - -
Amo16g0749 773 SMART ultradead3 141 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0749 Amo-Chr16 11932432 11937696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0749 104 486 Eukaryotic Initiation Factors Gene Family AT1G72730 37.405 7.06e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0749 - - gmx:100779706 1126.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0749 16 11932432 11937696 Amo19g1359 19 27815265 27822203 ECH
Amo16g0749 16 11932432 11937696 Amo16g0749 16 11932432 11937696 ECH
Amo16g0749 16 11932432 11937696 Amo19g1359 19 27815265 27822203 PCT
Amo19g1359 19 27815265 27822203 Amo16g0749 16 11932432 11937696 PCT