Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0745 ATGGCGTGGCTGGGGCTTGGAAAGAAGAGAATTTATATGAATATTTCTAGAGCTTTGAATACATCTTCATTTAGGCGTGTGGCAGGGTCAAGCAGTGGATCTATTTATACTGCACAATCTGTTAATGCATCAGCAAGATGCATGCCAGACCTCATCAGCCACACATCTGTGGGAGTGGCTAGTTTTTTCAGTGGGACTAAAGAAGGTGATATACGGTGCTTCCATGCTAGTCCGGAAGTTTGGGCAAGAAGAGGTGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTAAGAAAGGAAGGTAGGAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCCAAATCTAATCCTGATAAAACAGTAGAAGTATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAACCTCTCAGCATGGATACTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCAACGTTAAGAGGTTACATTCAGCTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGAGCATCAATCACATTCCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGAGTGATGCCRCAAACACTCGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTTGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGATGTTGGAGGAYATGGGTGGTGACATTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACCGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAAGCCGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGYCGCGGTCCATTGATAACTACCATAGTTAAAGCAGGGACCTTAACTTGTGGTCAGTATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAAATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTTCTGGTAGGACAAGGAAATRTGAGGAGGATAGACTTAGGAGGAAGTTGAATGAGGGCATCCCATCTACYTTGGAGTCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTGGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCCACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAGTAGAGAAGGCCCCTGGTACTTTTGAGACCCAGGTAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAGGGAGCAAGTCAAAGGGACCTGATGTTAAGATAGCCGGTTGTCGGGTTGTCGAAGGTTTTGTGGTGAGGACAGGAACCATGAGGCTCCTGAGAAGCGGGGAAGTGGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAGTTATCAGTGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTCAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2163 0.4577 MAWLGLGKKRIYMNISRALNTSSFRRVAGSSSGSIYTAQSVNASARCMPDLISHTSVGVASFFSGTKEGDIRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPKSNPDKTVEVFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFEPLSMDTAELAAMEVGVNVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLMLEDMGGDIQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQYVVVGSEWGRIRAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRTRKXEEDRLRRKLNEGIPSTLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRASIKLILHRVIYHLLEDIGNLIVEKAPGTFETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVVEGFVVRTGTMRLLRSGEVVFEGNCASLKREKQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0745 720 SUPERFAMILY Translation proteins 373 455 IPR009000 -
Amo16g0745 720 TIGRFAM IF-2: translation initiation factor IF-2 128 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo16g0745 720 Gene3D Translation factors 603 705 - -
Amo16g0745 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Amo16g0745 720 Gene3D Translation factors 372 485 - -
Amo16g0745 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Amo16g0745 720 Pfam Translation-initiation factor 2 492 591 IPR023115 -
Amo16g0745 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 496 609 IPR036925 -
Amo16g0745 720 Gene3D - 196 371 IPR027417 -
Amo16g0745 720 CDD IF2_eIF5B 202 366 - -
Amo16g0745 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 369 IPR027417 -
Amo16g0745 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 37 711 IPR015760 -
Amo16g0745 720 Gene3D - 497 601 IPR036925 -
Amo16g0745 720 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 37 711 - -
Amo16g0745 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 199 369 IPR000795 GO:0003924|GO:0005525
Amo16g0745 720 CDD IF2_mtIF2_II 375 468 IPR044145 -
Amo16g0745 720 Pfam Elongation factor Tu GTP binding domain 204 360 IPR000795 GO:0003924|GO:0005525
Amo16g0745 720 TIGRFAM small_GTP: small GTP-binding protein domain 202 355 IPR005225 GO:0005525
Amo16g0745 720 CDD mtIF2_IVc 609 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0745 Amo-Chr16 11900026 11905313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0745 190 684 Eukaryotic Initiation Factors Gene Family AT1G76810 27.305 8.08e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0745 K02519 - gmx:100790572 1127.08