Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0742 ATGGATGCAAAGCTCCATCCAAACTCTGAGGAGTCCGGTAGTTCCTTCGACAACTTGAATTCGGTGTGGTTGTCTTCCGGTACAGCCAGTGGAGAAAACCAGCCAACATGTGACAGGGTCACAGCAGCTTATCTTCATCATATGCAGAACGGGAAGTTCGTCCAGCCCTTTGGGTGCTTGCTAGCTTTGGATGAGAAGACATTTAGGGTCATTGCATACAGTCAGAATGCATCTGAAATGCTTACCATGGTTAGCCATGCTGTCCCAGGTGTTGGTGATCACCCTGCTCTTGGCATTGGCACCGACATTCGGACTATTTTCACGGCCTCGAGTGCTGTTGCTTTGCAAAAGGCCCTTGCAGTTCTGAAGGGTGATGGCTTTAAATTTCATGAGGATGATCATAGGGAAGTGATTGCTGAGGTTGCAAAGCCAGGCCTTGAGCCATATCTGGGTTTGCACTATCCAACCACTGATATTCTCCAAGTTGCCACTTGCCACTTGCAATATATGAATTCAATTGCTTCCCTGGTTATGACAGTTGTGGTCAATGATAATGATAATGAAGATGGGAATGGATCTGATGTTGTTCAGCCACAAAAGAGAAAGAGAATTTGGGGTTTAGTAGTTTGCCATAACACTACTCCAAGAGACAAGGTATGGAGATTAGGTGTGGCTCCAAGTGAATCTCACATAAGAGAGTTAGCTTTATGGCCCTCTAAGTGCCATAAGGACTCCACAGGTTTGAGTACAGATAGCTTGTCTAATGCAGGCTTCCCAGGAGCTGCTGCTCTTGGTGACGTTGTTTGTGGGATGGCAACTGTGAGAATTTCTTCCATGGACGTAGTTTTCTGGTTTAGATCACACACTGCTGCAGAAATCAGATGGGGTGGTGCAAAGRATGAACCTGGTGAAAGSGATGATCCTACAAAGATGAGTCCAAGATCATCATACAAGGCTTTCCTTGAAGTTGTGAAGGGAAGGAGCTTACCATGGAAGGACTATGAATAA 1008 0.4563 MDAKLHPNSEESGSSFDNLNSVWLSSGTASGENQPTCDRVTAAYLHHMQNGKFVQPFGCLLALDEKTFRVIAYSQNASEMLTMVSHAVPGVGDHPALGIGTDIRTIFTASSAVALQKALAVLKGDGFKFHEDDHREVIAEVAKPGLEPYLGLHYPTTDILQVATCHLQYMNSIASLVMTVVVNDNDNEDGNGSDVVQPQKRKRIWGLVVCHNTTPRDKVWRLGVAPSESHIRELALWPSKCHKDSTGLSTDSLSNAGFPGAAALGDVVCGMATVRISSMDVVFWFRSHTAAEIRWGGAKXEPGEXDDPTKMSPRSSYKAFLEVVKGRSLPWKDYE* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0742 335 PANTHER TWO-COMPONENT HISTIDINE KINASE 216 335 - -
Amo16g0742 335 Gene3D - 205 335 IPR043150 -
Amo16g0742 335 PANTHER PHYTOCHROME A 127 163 - -
Amo16g0742 335 PANTHER PHYTOCHROME A 216 335 - -
Amo16g0742 335 PANTHER PHYTOCHROME A 1 121 - -
Amo16g0742 335 SUPERFAMILY GAF domain-like 216 335 - -
Amo16g0742 335 PANTHER PHYTOCHROME A 164 216 - -
Amo16g0742 335 SUPERFAMILY PYP-like sensor domain (PAS domain) 49 126 IPR035965 -
Amo16g0742 335 Pfam Phytochrome region 216 335 IPR013515 GO:0006355|GO:0009584
Amo16g0742 335 SUPERFAMILY GAF domain-like 127 216 - -
Amo16g0742 335 PANTHER TWO-COMPONENT HISTIDINE KINASE 164 216 - -
Amo16g0742 335 PANTHER TWO-COMPONENT HISTIDINE KINASE 127 163 - -
Amo16g0742 335 Gene3D PAS domain 49 160 - -
Amo16g0742 335 Pfam PAS fold 43 121 IPR013654 GO:0006355
Amo16g0742 335 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 127 216 IPR016132 -
Amo16g0742 335 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0742 Amo-Chr16 11873298 11874893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0742 204 335 Histidine Kinase Gene Family AT1G09570 64.179 4.39e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0742 K12120 - var:108324398 195.667