Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0740 ATGGGAAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGCAAGGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCTTGAATTACATCACTAAGCATGGCCATGGATGTTGGAGCTCCGTTCCCAAACTAGCCGGTCTGCAAAGGTGCGGGAAGAGCTGCAGATTAAGGTGGATAAATTACCTGCGGCCGGATTTAAAGAGAGGAGCATTCTCTGAGCAGGAAGAGAAGTTGATAATTGAGCTGCATGCACTTCTTGGTAACAGGTGGTCACAGATTGCTGCACAGTTACCTGGCAGAACTGACAATGAGATCAAGAATCTTTGGAATTCCTGCCTCAAGAAGAAGCTCAGGCWAAGAGGGATTGACCCTAACACTCACCAACCTCTCTCTTCATCCCACAACAACGACAACAAGCAGCACCATCATCAACCATCAACCACCACTGACCACCCAAATTCATCATCCATCGACAACAATCATCCTCAACAGGAATCATCATCACTCTTCCTAGATACACCTACTACTACTACTACTACTACTACTACTTCTTCTTCTCATGATATCGTGGGCTACCTCTCCTTCACCAACAACAACAACAACAACATCTATGGAACAACACCAACCTCTCTTTGCTTCACACCAACCTCCGCCACTACTTCTTCATCTTCAGACCTCAATTCCGCTATGTTCACTTCACTTTTCCCACCACAGATCATGAAGCCTGCCGCTACAACCACTGAACCCCTCAATTGGGAAAGCAGCAGCTTCATTGATAGCACCAGCACCATAGCTTGGGGACAAGAATCCACTGCTCTAGAGGCGGCACAAAAAGTAGATGACATWAATAAGTGGTCTGAATATCTTAACAGCAACATCAACCCCTTCTTCCTCGCCAACAACAACACAATCACACTGCCTTCTCCTTCTATCTACACCACCAACGACGACATCGTCAAACCAGAAACTTTCATAAATGTAGATGAATCCAATACCATCGCCTCCTGGCACCAAACCACCACCGGTAGCGCCTCAACCCACCACCAACCACCTTTTCAGCAGCCCTCAGATTTATACACCAAAGATCTCCACACTAGATTTTCACTGGCRTTTGGACAAACCATGTAA 1125 0.4676 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSEQEEKLIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRXRGIDPNTHQPLSSSHNNDNKQHHHQPSTTTDHPNSSSIDNNHPQQESSSLFLDTPTTTTTTTTTSSSHDIVGYLSFTNNNNNNIYGTTPTSLCFTPTSATTSSSSDLNSAMFTSLFPPQIMKPAATTTEPLNWESSSFIDSTSTIAWGQESTALEAAQKVDDINKWSEYLNSNINPFFLANNNTITLPSPSIYTTNDDIVKPETFINVDESNTIASWHQTTTGSASTHHQPPFQQPSDLYTKDLHTRFSLAFGQTM* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0740 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Amo16g0740 374 MobiDBLite consensus disorder prediction 146 183 - -
Amo16g0740 374 CDD SANT 17 61 IPR001005 -
Amo16g0740 374 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Amo16g0740 374 PANTHER MYB DOMAIN PROTEIN 55 1 247 - -
Amo16g0740 374 PANTHER MYB DOMAIN PROTEIN 55 260 366 - -
Amo16g0740 374 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g0740 374 Gene3D - 68 148 - -
Amo16g0740 374 PANTHER HOMEODOMAIN-RELATED 1 247 - -
Amo16g0740 374 PANTHER HOMEODOMAIN-RELATED 260 366 - -
Amo16g0740 374 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g0740 374 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Amo16g0740 374 Gene3D - 11 67 - -
Amo16g0740 374 SMART sant 13 63 IPR001005 -
Amo16g0740 374 SMART sant 66 114 IPR001005 -
Amo16g0740 374 CDD SANT 69 109 IPR001005 -
Amo16g0740 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Amo16g0740 374 MobiDBLite consensus disorder prediction 119 183 - -
Amo16g0740 374 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0740 Amo-Chr16 11856058 11857606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0740 1 374 MYB Transcription Factor Family AT1G09540 44.665 2.78e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g0740 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0740 K09422 - gmx:100790184 354.755