Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0716 ATGCAGTCTGAAATTAAGAAGCAACAGGATGAATCAACAACTAGCCGGCCGAAGGATACCACTGTGTCTCATCAGAAAAATGTCCCTGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAAGCAAGAGGGGATGAGGCCTTTAAGAGGCAAGACTACAACATGGCCATAGATTCTTATACCCAAGCAATTGATCTGGACCCTAGTGAGGGTACTTTGCTATCCAATAGAAGTCTCTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCCGATGCAAAGGCATGCAGAATATTAAGACCGGATTGGCCGAAAGCCTGTTATAGGGAAGGAGCAGCTTTGAGAATTTTACAGAAGTTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAGAATAAGGAGCTAGTAAATGCATTCAGGGAAGCTGTCGAAGCTGGGAGGAAGTTTCATGGTAAAACAGCTCAGAATAATTCATAA 501 0.4371 MQSEIKKQQDESTTSRPKDTTVSHQKNVPEVAPEAKKRAAEAKARGDEAFKRQDYNMAIDSYTQAIDLDPSEGTLLSNRSLCWIKLGQAEHALADAKACRILRPDWPKACYREGAALRILQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGKTAQNNS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0716 166 SUPERFAMILY TPR-like 38 151 IPR011990 GO:0005515
Amo16g0716 166 ProSiteProfiles TPR repeat profile. 107 140 IPR019734 GO:0005515
Amo16g0716 166 SMART tpr_5 73 106 IPR019734 GO:0005515
Amo16g0716 166 SMART tpr_5 39 72 IPR019734 GO:0005515
Amo16g0716 166 SMART tpr_5 107 140 IPR019734 GO:0005515
Amo16g0716 166 Gene3D Tetratricopeptide repeat domain 37 152 IPR011990 GO:0005515
Amo16g0716 166 MobiDBLite consensus disorder prediction 1 47 - -
Amo16g0716 166 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 6 161 - -
Amo16g0716 166 MobiDBLite consensus disorder prediction 30 47 - -
Amo16g0716 166 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Amo16g0716 166 PANTHER BNAC03G33870D PROTEIN 6 161 - -
Amo16g0716 166 Pfam Tetratricopeptide repeat 46 71 IPR019734 GO:0005515
Amo16g0716 166 Pfam Tetratricopeptide repeat 108 140 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0716 31 135 U-box Gene Family AT3G07370 34.286 6.00e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0716 - - gmx:100798118 248.44