Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0696 ATGGAACATCCACAGCCCCCTTATCATACCAAAACCTTTCCTGCTGAATTCTTCAAAGTTTACTTGCCCCAAAGGAGTTCTACTCTCTTGCGCATACCAAAGGCTTTCAGTGCCAAGTTCATCAATGCAAATATAGTAAGAAAGACTGCTCTTGTGGATCATGAAGGAAACTCTTGGGATGTTGAGTTAAAGAAGATGGATGATGGATTATTGGTCCTCAAGAATGGATGGAAAGAGTTTGCTAGAGACAAGTGTTTGGAACAAGCTGATTTCTTGGTCTTTGAGTATGATGGCAACTCCAAGTTTCATGTGAAGATATTTTCCAAAAGTGGATGCAGAAAAGAAGCTGCAATTAGTGGGAAATTTAACCCCGTTATGATCTCGGATGATGAAGATTCTGATCTTCAGAATAGTAAAAGAAAGCATGAGCGTGGCCTTAAAAGGAAACTTTCACCAATCACGGCACTCAAATTAAACCAGAAATCTCACTCAAAAAAGGGAACTACTGTACGGAAATCCAAAAGAGTTAAGAATGGGGCAAATGGTAGCAACTGTGAGAGCAAGGCATCTGGTCTTGTGAAGTTCGTTCCCCTGAAGGACCCTCATTTTGTGACACCTATGTCACACTGGAGAATGAAGAAAATGGAAATTCCTAGAAGAGTAACAAAGGAATTGAACATCAGCCTAAAATCAGGGATTATGCTGCGAGACGAGAATGACAAGCTATGGCCAGTGAAGATCGTCACCGGGGATCGCGGACGCTGCTATTTCGCAAAAGGGTGGTCTAGTTTCTGGAAGGCTAAAAGTGTTGAAGAGGGCAACCTTTGTGATTTCAAGTTTGTTGTTGGCAAAGAGAATAGAGCTGAGGAACTGCTTGTGAGAGTACACTCACATTAA 897 0.4181 MEHPQPPYHTKTFPAEFFKVYLPQRSSTLLRIPKAFSAKFINANIVRKTALVDHEGNSWDVELKKMDDGLLVLKNGWKEFARDKCLEQADFLVFEYDGNSKFHVKIFSKSGCRKEAAISGKFNPVMISDDEDSDLQNSKRKHERGLKRKLSPITALKLNQKSHSKKGTTVRKSKRVKNGANGSNCESKASGLVKFVPLKDPHFVTPMSHWRMKKMEIPRRVTKELNISLKSGIMLRDENDKLWPVKIVTGDRGRCYFAKGWSSFWKAKSVEEGNLCDFKFVVGKENRAEELLVRVHSH* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0696 298 ProSiteProfiles B3 DNA-binding domain profile. 200 298 IPR003340 GO:0003677
Amo16g0696 298 CDD B3_DNA 201 297 IPR003340 GO:0003677
Amo16g0696 298 PANTHER B3 DOMAIN-CONTAINING 14 286 - -
Amo16g0696 298 SMART B3_2 203 289 IPR003340 GO:0003677
Amo16g0696 298 SMART B3_2 17 110 IPR003340 GO:0003677
Amo16g0696 298 MobiDBLite consensus disorder prediction 129 183 - -
Amo16g0696 298 CDD B3_DNA 17 108 IPR003340 GO:0003677
Amo16g0696 298 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
Amo16g0696 298 Pfam B3 DNA binding domain 205 295 IPR003340 GO:0003677
Amo16g0696 298 Pfam B3 DNA binding domain 17 109 IPR003340 GO:0003677
Amo16g0696 298 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 14 286 - -
Amo16g0696 298 SUPERFAMILY DNA-binding pseudobarrel domain 199 281 IPR015300 -
Amo16g0696 298 Gene3D - 10 112 IPR015300 -
Amo16g0696 298 Gene3D - 195 296 IPR015300 -
Amo16g0696 298 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0696 16 297 B3 DNA Binding Superfamily AT5G66980 32.686 5.30e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo16g0696 B3 4.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0696 - - ahf:112695440 586.26