Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0690 ATGTTCGATGGATTGCCATCATCATCAGAACACTTCCACCAATTCATAACACCAAGGACCACTACTTCTACTACTCTTCCTCTTCCTCATCATCATCATCATCATCATCATCACTTATCACCATCATCATCATCATCATCTTCGTCCTTCTCCCCACTACTCCATCATCATGCTTCTCTAACCCCCATCAACACCAACACCTTCTTACCATTTGACCCTTATAACCCTCATCATCATCAACAACAACAACCAAATGCCACGTTTTCTTCAGTACTCAATAACAATAACTTGTTCCACACTAGTGCTACTGATGCAAGAGTTCAAACACAGGTATTACCAAACGACTTGATTGATTCTTCCTGGAGCAACGATGAAGTTGTTGCACTCTTGAGGATCAGATCAACCATGGACACTACTTGGTTCCCTCAACTCACTTATTGGGACCATGTCTCTAGAAAGCTAGGAGAGCTTGGATTCAAGAAGAGTGGTGACAAGTGCAAGGAAAAATTCGAAGACGAGACAAGATATTTCAACAACTACGCCAAGAACAATAGTTACCGATTTCTTAATGAGCTTGAAGAGTTCTATCAAGGTGATAATCATAATGAAAACCCTATGGTAGATAACCAAGATCATGTTGTGACTGAAAAGACTCAAGAGTTTGAACACCCAATGAATGCCGGAGGAGGCGATATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAGGAGAGTTCAAGAGATGGCAAATCAGTGAAAGAACAATGTGAAGAAGACAATGAGAGTGAGAAGAAGATGAAGATGAAGAGGAAGAGGAAGAGGCGTTGCAGGTTTGAGATGTTGAAGGGTTTCTGTGAGAGCATTGTGAACAACATGATGGCTCAACAAGAAGAGATACATAACAAGCTCATTGAAGACATGCTGAGAAGAGATGAAGAGAAGCTTCAAAGAGAGGAAGCATGGAAGAAGCAAGAGACTGAAAGGATGAACAAGGAGCTTCAGATTATGGCCCAAGAACAAGCCATTGCAGGTGATAGGCAAGCTTCCATCATTGAATTCTTGAAGAAATATGCAGCAACAAACCCTAATAATAATGAACCAACACCTTCTTCTTCAAAACTGATTATTCCATCAAGTCATCAATTTCAAATTCCACCATTATCAGCAGAAAACCCTAGCTCTATGAGTGACACATTATTACAACAAGTACATTCTTCTTCCACCCATTCATCTCCAGCTTCCCACAACAACACTACTAGTTCTTCCTCCCTCAACCGCCACGATAACTATCACTCAAATTTGCTTGTTAAGCCGTTAGTAACAGATCAGAAGGAGAATAATGTTGGGAGAAGATGGCCAAGAGATGAAGTTTTGGCTCTCATAAACCTTAGATGTGAGAGCATTAAGATGAATAATAATGCTGAAGAGAGGGAAAGTGGGAACAATAATAAGATTCCTCTATGGGAAAGAATCTCACAAGGGATGTCAGATTTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCATTGATTCAAGGACTTGTCCCTACTTCCATCAACTCAAGAGTCTCTATGATGAAGGAAAGCTTGTTCATCAACCGGAGACGACCACGCCGGAAAACCATTCCGGGCAACTTCTTCCTCCTTCTGATCAGGTGGGGTCTGGTGGCGGTTTCAGTGATGATCATGAGAAAACTTTGATACAAGAGCCACCATTGAATTTTGGTTAG 1803 0.4104 MFDGLPSSSEHFHQFITPRTTTSTTLPLPHHHHHHHHHLSPSSSSSSSSFSPLLHHHASLTPINTNTFLPFDPYNPHHHQQQQPNATFSSVLNNNNLFHTSATDARVQTQVLPNDLIDSSWSNDEVVALLRIRSTMDTTWFPQLTYWDHVSRKLGELGFKKSGDKCKEKFEDETRYFNNYAKNNSYRFLNELEEFYQGDNHNENPMVDNQDHVVTEKTQEFEHPMNAGGGDIEEEEEEEEEEEEEEEESSRDGKSVKEQCEEDNESEKKMKMKRKRKRRCRFEMLKGFCESIVNNMMAQQEEIHNKLIEDMLRRDEEKLQREEAWKKQETERMNKELQIMAQEQAIAGDRQASIIEFLKKYAATNPNNNEPTPSSSKLIIPSSHQFQIPPLSAENPSSMSDTLLQQVHSSSTHSSPASHNNTTSSSSLNRHDNYHSNLLVKPLVTDQKENNVGRRWPRDEVLALINLRCESIKMNNNAEERESGNNNKIPLWERISQGMSDLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSIDSRTCPYFHQLKSLYDEGKLVHQPETTTPENHSGQLLPPSDQVGSGGGFSDDHEKTLIQEPPLNFG* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0690 600 Pfam Myb/SANT-like DNA-binding domain 119 184 IPR044822 -
Amo16g0690 600 Pfam Myb/SANT-like DNA-binding domain 454 548 IPR044822 -
Amo16g0690 600 Coils Coil 225 252 - -
Amo16g0690 600 CDD GT1 454 526 - -
Amo16g0690 600 MobiDBLite consensus disorder prediction 221 273 - -
Amo16g0690 600 PANTHER - 43 564 - -
Amo16g0690 600 MobiDBLite consensus disorder prediction 387 432 - -
Amo16g0690 600 Gene3D - 456 524 - -
Amo16g0690 600 Gene3D - 121 179 - -
Amo16g0690 600 ProSiteProfiles Myb-like domain profile. 448 519 IPR001005 -
Amo16g0690 600 MobiDBLite consensus disorder prediction 250 270 - -
Amo16g0690 600 MobiDBLite consensus disorder prediction 557 600 - -
Amo16g0690 600 MobiDBLite consensus disorder prediction 21 51 - -
Amo16g0690 600 ProSiteProfiles Myb-like domain profile. 113 174 IPR001005 -
Amo16g0690 600 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 43 564 - -
Amo16g0690 600 SMART sant 452 521 IPR001005 -
Amo16g0690 600 SMART sant 117 176 IPR001005 -
Amo16g0690 600 MobiDBLite consensus disorder prediction 231 249 - -
Amo16g0690 600 MobiDBLite consensus disorder prediction 558 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0690 Amo-Chr16 11159412 11162050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0690 121 551 Trihelix Transcription Factor Family AT5G28300 42.710 2.73e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo16g0690 Myb_DNA-bind_4 6.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0690 - - aip:107645832 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0690 16 11159412 11162050 Amo16g0690 16 11159412 11162050 ECH