LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0675	ATGGGGTGTGTGATTAGCAGGGAGGTTTCTTCTGGAATAATCGCAGAGGTGAAAGAGGAGAAGAGTTTCGGTGCTGATTCTAAGAGTAATAATAATGTTGATGGAGTCGCGGTAGAGGTTCAGAATCAGAATCGGAATCACAATGGTGGTAACCACCACAAGGAAGAGAAGAGTGGCAGCGAAGTTCAGAAGCCGAGGGGAGAAAGGAGAAGATCGAAGAAACCGAATCCGCGGCTAAGCAATCCTCCCAAGCATTTAAGGGGTGAGCAGGTTGCGGCTGGCTGGCCACCCTGGCTCACCGCCGTGTGCGGCGAAGCGCTTAACGGCTGGATTCCCCGAAAGGCTGACACATTTGAGAAGATTGATAAGATCGGGCAAGGAACATATAGTAATGTATACAAAGCTAAAGACATGATGACAGGCAAAATTGTTGCTCTAAAGAAGGTTCGATTTGATAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGATTGGATCATCCAAATGTTGTAAAGTTGCAAGGCTTAGTTACATCAAGGATGTCCTGCAGTCTGTATTTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGTTGCAAGCCCACGAATCAGGTTCACGGAACCTCAGGTCAAATGTTACATGCATCAACTGCTATCTGGACTTGAGCATTGTCATAAGCGTCGTGTACTTCACCGTGATATTAAAGGATCAAATCTTCTCATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTTTGTTCGATCCAAACCATAAGCATCCCATGACTAGTCGAGTGGTAACTCTTTGGTACCGGCCCCCAGAATTGCTTCTTGGTGCCACCGATTATGGTGTGGGTATAGACCTATGGAGCGCCGGATGCATTTTAGGAGAGTTATTGGCTGGAAAGCCAATTATGCCGGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAATATTGGAAGAAGTCGAAGTTGCCTAATGCCACCTTGTTTAAGCCTCGAGAGCCATACAAGAGATGCCTAAGAGAGACATTTAAAGATTTTCCACCTTCTGCACTACCCCTTATCGAAAGTCTTCTGGCATTTGATCCTGCCGAACGGAAAACTGCCTCAGATGCTTTGCGAAGTGAGTTCTTCACCACAGAGCCATATGCTTGTGATCCTTCAAGTCTTCCAAAATATCCTCCAAGCAAGGAAATGGATGCTAGACGGCAGGACGAAGAGGCCAGAAGAATAAGGGCTGCAAGCAAAGCTCAGGCTAATGGTCCAAGGAAGCATCGCATGCGTGATCGTGCCGTGAAAGCTATTCCTGCTCCTGAAGCCAATGCTGAGATTCAATCCAACATTGATAGAAGGCGTCTAATAACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCACCGCCACATCAAGATGGACAACTTGGATTTCCATTGGGATCTTCCCATCGTATTGATCCAGATACTGTTCCTATTGATGTCTCCTTCACTTCAACAACGTCGTATATTTATTCAAAGGAACCATTCCAAGCGTGGTCAGGTCCTATAGGTAATGCTGCTGCTGAAATTGGAGTGCCAAAAAACAAGAGACACACCGCAACTGATGCATTGGATTTATCAAAACCACATAAAGGTTCACACAAGGATAAAGTTAAAGGAAAGAAAACCATAGCTTAG	1749	0.4483	MGCVISREVSSGIIAEVKEEKSFGADSKSNNNVDGVAVEVQNQNRNHNGGNHHKEEKSGSEVQKPRGERRRSKKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMVHDLAGLVASPRIRFTEPQVKCYMHQLLSGLEHCHKRRVLHRDIKGSNLLIDNEGILKIADFGLASLFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCLRETFKDFPPSALPLIESLLAFDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDARRQDEEARRIRAASKAQANGPRKHRMRDRAVKAIPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHRIDPDTVPIDVSFTSTTSYIYSKEPFQAWSGPIGNAAAEIGVPKNKRHTATDALDLSKPHKGSHKDKVKGKKTIA*	583

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0675	582	PANTHER	OS01G0367700 PROTEIN	53	555	-	-
	Amo16g0675	582	Pfam	Protein kinase domain	118	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	551	582	-	-
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	420	437	-	-
	Amo16g0675	582	SUPERFAMILY	Protein kinase-like (PK-like)	112	409	IPR011009	-
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	410	452	-	-
	Amo16g0675	582	CDD	STKc_CDK9_like	118	402	-	-
	Amo16g0675	582	SMART	serkin_6	118	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g0675	582	ProSiteProfiles	Protein kinase domain profile.	118	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	48	68	-	-
	Amo16g0675	582	Gene3D	Phosphorylase Kinase; domain 1	105	200	-	-
	Amo16g0675	582	Gene3D	Transferase(Phosphotransferase) domain 1	201	442	-	-
	Amo16g0675	582	PANTHER	CELL DIVISION PROTEIN KINASE	53	555	-	-
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	18	90	-	-
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	26	47	-	-
	Amo16g0675	582	ProSitePatterns	Protein kinases ATP-binding region signature.	124	147	IPR017441	GO:0005524
	Amo16g0675	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	238	250	IPR008271	GO:0004672\|GO:0006468
	Amo16g0675	582	MobiDBLite	consensus disorder prediction	552	569	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0675	Amo-Chr16	11016801	11021033	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g0675	110	442	Core Cell Cycle Gene Families	AT5G10270	52.722	1.09e-121	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Amo16g0675		Pkinase	3e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0675	K08819		-	gmx:100786837	999.964