Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0659 ATGGGTGCGCCGAAGAAGAGCGGCGGCGGAGGCAGGGTTTCCGTCACAGAGGATTCCGACGAACTGGTTCGTGTTCCGTTGCAGGCCATCCTCTTAGCTGATAGCTTCAACACCAAGTTCAGACCTATCACCCTCGAATGCCCGAAGGTCCTCTTGCCTCTTGTCAATGTTCCGATGATCAATTACACCTTGACCTGGCTCGAATCTGCCGGCGTCGAAGACGTTTTCGTTTTCTGCTGCGCCCATTCCAAGCAAGTCATCGACTATTTGGACAAATCCGGTTGGCTCTCTCAGCCTAATTTCTCCGTAACCACCATTGAATCGCACAATTCCGTCAGCGCCGGTGACGCCCTCCGCCTAATCTACGAGCGTAACGTGATTCATGGAGACTTTGTCCTCATCAGTGGTGATACTGTGAGCAACATGTCGCTTACTCAGGCACTTGCAGAGCACAAAGAAAGGAAGAAGAAGGATAGTAATGCCGTCATGACAATGGTTATCAAACGCTCAAAAACTAACCCCGCTATTCATCAGTCTCGGCTTGGTACCGATGAGCTTTTCATGGCCATTAATCCGGATACCAAGCAGCTTTTGTATTATGAGGAGAGGACTGACCTTTCCAAAGGGATTATGCATCTTGACAAGTCATTTCTTGCTGATAACCCTTCCCTCACCTTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCGCCTGAAGTCCTTAGCCTGTTTACAGACAATTTTGATTACCAACATCTGCGGCGTCATTTTGTGAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTCGTGCATGAAATCCACTCAAACTATGCTTCACGGATTGATAATTTCCGGAGCTATGACACTGTTAGCAGGGATATAATCCATAGATGGACGTATCCAATGGTGCCAGATGTTATGAATTATGGCAACACAGCTACTAAACTTGAACGACAGGGAATGTATCGTGCTTCAGAAATATCACAATCACAAACCGCTGTTATTGGTCCCTTCACTGTTCTAGGATTTGGCACCAAAATTGGGAATAACACTATAATTTCGGATTCCGTTATTGGAAAAGGATGTAAAATTGGATCAAACGTTCAGATTAAAGGTTGCTACATATGGGACCATGTTACCATAGAAGATGGCTGTAAACTTAACCATGCTATTGTTTGTAATGAGGTGACTTTGAAGTCAGGAGCTGTTCTGGAACCTGGTGTTATTTTGTCATTCAAGGTTGTAGTTGGGCCAGAGTTTGTTGTCCCTCCTTATTCATATGTATCACTATTACAACAGCCTGTTGAGGAAGACAGTGATGAGGAGCTTGAATATGCTGACAGTACTAGTGTCATCACAAGCAAAGTGGATAAGTCGGATGAAGAGGATGCATCTGAAGTACCAGAGGCACGTATTAGCTCTGTTTCAGAGCTAGGTATGGGTGGGGTTGGTTACATTTGGCAAAAATGTGAAGGAAGCCAGGAAGAAGAGTGGAGGCATTCAGTGGCACCTATTCCTGCAGATAAAATTTCTGAGGCAATGAAAACCATGGAAGATGATCTGGAGTTAACTCATGATGGCAGTATTCTCCCACCTTCTGGAGAGCTGATACCCGATTCTAATGACTCAGATGAAGATAATGAAGACTCCAGGGATGATTTCTTTGAGAGAGAGGTTGAAGCGACATTCCTCAGGGCTGTGAATGAAAACATACAAGAAGACCACTTGATCTTAGAAGTTAACTCTTTGAAGTTGTCATGCAATAAGCTGACTGCTGATTGTGCGGGAGCTGTGTTTTATGCTATGATGAAGTATGCGGTAGACACTCCCCATAGTTCACTTGATGGCTTGATGCAGAATGTTAACGATGTTCTATCAAAATGGAAAAAGGCTCTTACATCCTATCTGACAGACATAGATGAGCAGATTGAGATCATACTGAAATTTGAAGAAATTTGTTTAGAATCTGCTAGGGAGTTTGCTCCATTATTCACTAAGATTTTGCTCCACTTGTATAAGGAGGATATTATTGAAGAAGATGCTATTTTAAGTTGGGAAGATGAGAAGAGAGATGCAGATGAGGCAGATAAAGTATTTGTTAACAAGGCTCAAGAATTTATCCAATGGCTAAAAGTGGCTGAAGAAGAAGATGAATAG 2172 0.4328 MGAPKKSGGGGRVSVTEDSDELVRVPLQAILLADSFNTKFRPITLECPKVLLPLVNVPMINYTLTWLESAGVEDVFVFCCAHSKQVIDYLDKSGWLSQPNFSVTTIESHNSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALAEHKERKKKDSNAVMTMVIKRSKTNPAIHQSRLGTDELFMAINPDTKQLLYYEERTDLSKGIMHLDKSFLADNPSLTLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSNYASRIDNFRSYDTVSRDIIHRWTYPMVPDVMNYGNTATKLERQGMYRASEISQSQTAVIGPFTVLGFGTKIGNNTIISDSVIGKGCKIGSNVQIKGCYIWDHVTIEDGCKLNHAIVCNEVTLKSGAVLEPGVILSFKVVVGPEFVVPPYSYVSLLQQPVEEDSDEELEYADSTSVITSKVDKSDEEDASEVPEARISSVSELGMGGVGYIWQKCEGSQEEEWRHSVAPIPADKISEAMKTMEDDLELTHDGSILPPSGELIPDSNDSDEDNEDSRDDFFEREVEATFLRAVNENIQEDHLILEVNSLKLSCNKLTADCAGAVFYAMMKYAVDTPHSSLDGLMQNVNDVLSKWKKALTSYLTDIDEQIEIILKFEEICLESAREFAPLFTKILLHLYKEDIIEEDAILSWEDEKRDADEADKVFVNKAQEFIQWLKVAEEEDE* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0659 723 CDD eIF-2B_epsilon_N 27 243 IPR035543 -
Amo16g0659 723 SUPERFAMILY ARM repeat 560 719 IPR016024 -
Amo16g0659 723 ProSiteProfiles W2 domain profile. 554 723 IPR003307 GO:0005515
Amo16g0659 723 MobiDBLite consensus disorder prediction 529 557 - -
Amo16g0659 723 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 16 307 IPR029044 -
Amo16g0659 723 Pfam Nucleotidyl transferase 29 168 IPR005835 GO:0009058|GO:0016779
Amo16g0659 723 Pfam eIF4-gamma/eIF5/eIF2-epsilon 646 723 IPR003307 GO:0005515
Amo16g0659 723 SMART 542_3 634 721 IPR003307 GO:0005515
Amo16g0659 723 Gene3D Hexapeptide repeat proteins 323 462 - -
Amo16g0659 723 SUPERFAMILY Trimeric LpxA-like enzymes 272 433 IPR011004 -
Amo16g0659 723 CDD W2_eIF2B_epsilon 557 723 IPR044123 GO:0005085|GO:0031369
Amo16g0659 723 SUPERFAMILY Nucleotide-diphospho-sugar transferases 24 373 IPR029044 -
Amo16g0659 723 Gene3D - 547 723 - -
Amo16g0659 723 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 15 722 - -
Amo16g0659 723 CDD LbH_eIF2B_epsilon 345 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0659 Amo-Chr16 10723816 10729766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0659 1 718 Eukaryotic Initiation Factors Gene Family AT2G34970 61.241 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0659 K03240 - gmx:100784894 1165.6