Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0648 ATGGCCAGCAGATTTTGGTTTGGAAAGAAGAAAAGTAGTAGCAGCCATGGTGGCGGTTCAGAAAGGAAGTTCTCATTGGACGATGCTTCTCTCGCCGCAAAACCCAGAAGGCGAACCAGCTTCTTGTTTTCTTCTCCTTCTCCACTTCAAGGGTCGAGGCACATTGAGAGGGATAATAGACATTCCTTAACCCCAACAAGATCTGAATATTCCGTATCAAGAACACCACCACCCTTTCCCTTTCGACCCCATGATGATGATCATGATGAAGATTCATTGCCGCCACCAGCCACTTGTTTAAGCTTCAAATGGAAAAATATCTTTAAGCCATGGAAGAAGAATAATAATAATATAAGAGCATCATCACCATCAACTACTAGGCCCTCTCCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCACCTCCTCCTCCTCCGCCTCCTCCTCCGACGCCGCCAAGCCGAGGCCATGGCAACTTTAATTTTCCTCCTCTCATCGCTTTCAGATCCTTCCAAATTCGTCATGCAACCAACAATTTTAGCAGAGAGAATTTAATTGGAAGAGGTGGGTATGCTGATGTTTTCAAGGGTCGTCTGAATGGGGAAATGTTCAGAAAAGGAATTCTGCCTCGTCTTCCAACTTTCTCCACTTGGAAGCTTAGCTTCTATTCTCCATGGCGAATCATTCATAGAGATATTAAATCTGATAATATTCTGCTCACTAAAAATTTTGAGCCACAGATTTGTGATTTTGGACTTGCAAAGTGGTTGCCACCAGATGCTGATCAGCAACATGTCACAAGATTTGAAGGCACATTAGGGTATTCTGCTCCGGAATATTTGACACATGGCATAGTAGATGAGAAAACAGATGTTTATGCATTTGGGATTCTCTTGCTGGAGATTTTAACCGGGCGTAAGGCCTTGGATTATTTGCAACAAAGCATTTTGATATGGGCAAAGCCATTAATTAATGGTCATAATGTTAAGGAGCTTGTTGATCCATCACTTGGTGAAGATTATGACATAGAGCAGGTGGAACGTCTTCTTTTGACTGCTTCTCTCTGTGTTGAGCATTCTCCATTCTTGCGTCCTCGCATGGTTCAGGCAAGCATTTATTATTTTTCTTTTCTTTCAAAAGTTAAGAGTAAAACTCAAATCTACAACTTATAA 1170 0.4248 MASRFWFGKKKSSSSHGGGSERKFSLDDASLAAKPRRRTSFLFSSPSPLQGSRHIERDNRHSLTPTRSEYSVSRTPPPFPFRPHDDDHDEDSLPPPATCLSFKWKNIFKPWKKNNNNIRASSPSTTRPSPPSPSPPPPPPPPPPPPPPPTPPSRGHGNFNFPPLIAFRSFQIRHATNNFSRENLIGRGGYADVFKGRLNGEMFRKGILPRLPTFSTWKLSFYSPWRIIHRDIKSDNILLTKNFEPQICDFGLAKWLPPDADQQHVTRFEGTLGYSAPEYLTHGIVDEKTDVYAFGILLLEILTGRKALDYLQQSILIWAKPLINGHNVKELVDPSLGEDYDIEQVERLLLTASLCVEHSPFLRPRMVQASIYYFSFLSKVKSKTQIYNL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0648 389 Pfam Protein kinase domain 226 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0648 389 SMART serkin_6 179 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0648 389 ProSiteProfiles Protein kinase domain profile. 1 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0648 389 SUPERFAMILY Formin homology 2 domain (FH2 domain) 138 146 - -
Amo16g0648 389 Gene3D Transferase(Phosphotransferase) domain 1 222 385 - -
Amo16g0648 389 SUPERFAMILY Protein kinase-like (PK-like) 172 373 IPR011009 -
Amo16g0648 389 PANTHER OS08G0249100 PROTEIN 226 372 - -
Amo16g0648 389 PANTHER OS08G0249100 PROTEIN 162 199 - -
Amo16g0648 389 MobiDBLite consensus disorder prediction 15 34 - -
Amo16g0648 389 MobiDBLite consensus disorder prediction 113 158 - -
Amo16g0648 389 MobiDBLite consensus disorder prediction 1 94 - -
Amo16g0648 389 Gene3D Phosphorylase Kinase; domain 1 160 213 - -
Amo16g0648 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Amo16g0648 389 MobiDBLite consensus disorder prediction 126 156 - -
Amo16g0648 389 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 226 372 - -
Amo16g0648 389 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 162 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0648 Amo-Chr16 10522937 10528282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0648 226 368 Trihelix Transcription Factor Family AT1G70460 49.342 1.01e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo16g0648 Pkinase 4.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0648 - - adu:107491806 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0648 16 10522937 10528282 Amo19g1760 19 49631678 49632607 ECH
Amo16g0054 16 792950 794834 Amo16g0648 16 10522937 10528282 ECH
Amo12g3017 12 117794711 117800523 Amo16g0648 16 10522937 10528282 ECH
Amo14g0478 14 6699027 6701417 Amo16g0648 16 10522937 10528282 ECH
Amo16g0648 16 10522937 10528282 Amo16g0648 16 10522937 10528282 ECH