Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0638 ATGTGCTTGCCTGAGTCAGAGAGAGACATGGCTCTGGAAGCTGTGTTGTATACTAATAACAACATTCAACAACCACTCCCTTCTTCTTCTTATGCAATCAACGACACCAACAAGGACTTGGACTTTTTCAACTTCAACAATGATACTGGCCTACACTATTTACTGTCACCGCCACCACCGCCGCCGGAAGAAACAGAAACAACCATGGATACCACATCAACTTGTTCTGAGCGTCCCAAGAGAAGGAGAGGAAAGACAAGAAAGAACAAGGAGGAGATCGAGAACCAAAGAATGACTCACATTGCCGTCGAACGTAACCGACGGAAGCAAATGAATGATTACCTCTCTCTCCTTCGCAATCTCATGCCAGATTCTTACGTTCAAAGGGGCGATCAAGCGTCCATAATAGGGGGTGCTATTAACTATGTGAAGGTGCTTGAGCAGAAACTGCAGTTTCTTGCTGCTACTACTAGCGATGAAGATGGAGGATCTGATCATACAAATAACAAAATTGGAACCATGCCTTTTTCCGAGTTCTTCGGCTTCCCACAAGTGACAGGGAATGCTGATATTGAAGTAACAATGGTGGAAAGCCATGCAAATCTGAAAATAAGGTCAAAGAAAAAGCCCAAGCAGCTCTTAAAGATGGTGTCTAATTTGCAAGCCATGCGTCTCACAATCTTGCATCTTAATGTCACCACCACTAACAATGATATTGTCCTCTATTCTCTCAGCGTTAAGGTGGAAGACGATTGCAAGTTGGGATCAGTGGATGAGATAGCCACGGCTGTGTGTCAAATGATGGAAAACATTCAACATGAGTCTGTTGAATAA 834 0.4365 MCLPESERDMALEAVLYTNNNIQQPLPSSSYAINDTNKDLDFFNFNNDTGLHYLLSPPPPPPEETETTMDTTSTCSERPKRRRGKTRKNKEEIENQRMTHIAVERNRRKQMNDYLSLLRNLMPDSYVQRGDQASIIGGAINYVKVLEQKLQFLAATTSDEDGGSDHTNNKIGTMPFSEFFGFPQVTGNADIEVTMVESHANLKIRSKKKPKQLLKMVSNLQAMRLTILHLNVTTTNNDIVLYSLSVKVEDDCKLGSVDEIATAVCQMMENIQHESVE* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0638 277 SMART finulus 101 152 IPR011598 GO:0046983
Amo16g0638 277 Gene3D - 77 159 IPR036638 GO:0046983
Amo16g0638 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 156 IPR036638 GO:0046983
Amo16g0638 277 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 67 275 - -
Amo16g0638 277 MobiDBLite consensus disorder prediction 58 91 - -
Amo16g0638 277 PANTHER MAX DIMERIZATION, MAD 67 275 - -
Amo16g0638 277 Pfam Helix-loop-helix DNA-binding domain 96 146 IPR011598 GO:0046983
Amo16g0638 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0638 Amo-Chr16 10360425 10361809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0638 86 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 61.453 3.18e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0638 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0638 - - aip:107645875 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0638 16 10360425 10361809 Amo16g0638 16 10360425 10361809 ECH