Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0622 ATGCAAGATATATTCGGATCAGTTCGGCGATCGCTGGTGTTCCGTGCTTCGCCTGAGAACGAAGAGCACTCGCTGAGAGGAACCCTAGTTGATAAGATCGGTTACTGTATACGCAATTCCAGAGTCTTCTCTAAGCCCTCACTGTCGCCACCGTCCTTGCCGCCGATTCCCAAGGACGTTGCTGCTGCTGCTCCGCCGCCGCCTACGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTTTATGTTGGAATGAATCTCGATTCTGGAGAACTTTTAGCAGTTAAACAGGTTTTGATTGCAGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATGTAAAAGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACACCTTAAATATTCTCCTGGAGTTTGTCCCTGGTGGATCCATATCATCACTGTTGGGGAAATTCGGAGCTTTCCCTGAGGCAGTCATAAGAACTTACACAAAGCAGTTGCTGCTTGGACTTGAGTACTTGCACAAAAATGGAATAATGCACAGAGATATTAAGGGGGCCAACATTCTTGTAGATAATAAAGGTTGCATTAAACTTGCAGATTTTGGGGCCTCCAAACAAGTTGTTGAGCTGGCTACTATTTCGGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAGGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGCACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAACAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCTGTTGCAGCCAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCATATTTGAGGCCATCGGCATCAGAACTACTGCAGCATCCCTTTGTTACTGGTGAACCTATGGATTCTCTTCCTGTTTCATCTACTGTCGTGAAAAATTTGGAAGCTTCATCTTCTTGTGCTCCAAATGTTGAATCCTTCCTTCGTTGCTCAAATTTGAATCTTGAGGACTCAGGAAATAAAGAGTTATGGGGAATTAGCAACGATGATGATGACATGTGTATGATTGATGACGACGAGGAGTTCTCTCAGAATGATGTCAAACACGAACCTTTGATCTCAGAAAATATTGAGAGCTTCAACCTGATGTCAGATCCCTCTGATGATTGGGTGTGTAAGTTTGATGGAAGTCCGGAATTGGAACATAAAGGAGTCAGTTTTGGCACAGATGAAAATGATAAGTCACTTGGTCACTTAGGGGATTATAACAAGGAGCAGAAAGATTTTTCCTTTCCRAGCGTGCCATCTCTATCAGAGGAAGATGATGAGCTCACGGAGTCAAAAATTCAAGCTTTTTTGGAYGAGAAGGCTCTTGAACTGAAGAAGCTGCAGACACCTTTATATGAGGAGTTCTACAACAGTTTAAATATRTCTTGTTCACCAAGTGTGATTGATGGAACAAGTGATGAARCTGCTTCTCGGAAGTTTTTGAAATTACCTCCTAAGAGTARGTCACCAAGTCGGRTRCCAAGCACTCCATCTAAAGCAGCTGACAATACTGGAAGTCCTGGAAGTAATGGCAGGTCCKCATCAACTGTTGGCAATGTAAATGATCATAGTTCACAGGACCTTCCATCTTCTCCCCTTAATGAATTTAAAGGGCTGATAAGTATCGCCAAGAACAGTTTTTGTTGGACGACTAAGCTTAATTACCTGTCAAGTAGCTCCTCCAAGAGRATTCTTTCGGAATCTGAAATTATGGAAACGGAGGTAAAGAAGAATCACCTTTCAATAATTTCTGATCGGCTAAAAATAATTGATCCGCGGCATATTTACCCATCTCAGAATCACCATGGATGTTTCCATCTCTGCCGCAAAGGGAGAGAAGAGAAGCTGAGGTTGGTGCAGAAAATGGGTTTTGAGAAGTTGGAAGGAAAATCAGGAATGGCCAAAGATATGAAGACTTCTCTTACCTTCAAACAAAAATCATCAAGATCTTTTGCATCACCATAA 2130 0.4347 MQDIFGSVRRSLVFRASPENEEHSLRGTLVDKIGYCIRNSRVFSKPSLSPPSLPPIPKDVAAAAPPPPTIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPYLRPSASELLQHPFVTGEPMDSLPVSSTVVKNLEASSSCAPNVESFLRCSNLNLEDSGNKELWGISNDDDDMCMIDDDEEFSQNDVKHEPLISENIESFNLMSDPSDDWVCKFDGSPELEHKGVSFGTDENDKSLGHLGDYNKEQKDFSFPSVPSLSEEDDELTESKIQAFLDEKALELKKLQTPLYEEFYNSLNXSCSPSVIDGTSDEXASRKFLKLPPKSXSPSRXPSTPSKAADNTGSPGSNGRSXSTVGNVNDHSSQDLPSSPLNEFKGLISIAKNSFCWTTKLNYLSSSSSKRILSESEIMETEVKKNHLSIISDRLKIIDPRHIYPSQNHHGCFHLCRKGREEKLRLVQKMGFEKLEGKSGMAKDMKTSLTFKQKSSRSFASP* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0622 709 Coils Coil 105 132 - -
Amo16g0622 709 MobiDBLite consensus disorder prediction 442 481 - -
Amo16g0622 709 Gene3D Transferase(Phosphotransferase) domain 1 71 364 - -
Amo16g0622 709 MobiDBLite consensus disorder prediction 547 584 - -
Amo16g0622 709 SMART serkin_6 72 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0622 709 ProSiteProfiles Protein kinase domain profile. 72 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0622 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Amo16g0622 709 MobiDBLite consensus disorder prediction 521 584 - -
Amo16g0622 709 MobiDBLite consensus disorder prediction 442 464 - -
Amo16g0622 709 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Amo16g0622 709 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 608 - -
Amo16g0622 709 SUPERFAMILY Protein kinase-like (PK-like) 71 352 IPR011009 -
Amo16g0622 709 Pfam Protein kinase domain 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0622 709 CDD STKc_MAPKKK 71 335 - -
Amo16g0622 709 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1 1 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0622 Amo-Chr16 10151466 10162583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0622 1 595 MAP Kinase Kinase Kinase AT1G09000 58.926 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo16g0622 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0622 K20606 - gmx:100807537 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0622 16 10151466 10162583 Amo16g0622 16 10151466 10162583 ECH