Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0613 ATGACGGATTCGCAGTCCAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATCGACTATTACATGGCTCCGCCGATCCAAGGCGCCGATATCTGTTACAGCAGCTTCCACGGGGGAAAAGTGAAGGAGGTTCCTGTTATAAGAGTGTATGGTTCTACTCCTTCAGGCCAGAAGACTTGCTTGCACATTCACCGAGCCTTGCCATATATGTATGTGCCATGTTCGGATATACCACTTCAACCAGACCAAGAAGGTGATGCATACACGTATAAGGTTGCTGCTTCTCTTGAGAAAGCCTTGCAGCTTAAAGGCAGTGCTGGTTCAACAAGGCAGCATGTGCATGGCTGCAGCCTTGTACGAGCAAGAAGATTCTATGGTTACCACTCGTTTGAGGAGTTATTTGTTAAGATATACCTATATTATCCGCAAGATGTCTCCCGTGCTGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGACAAATGTTTACAACCTCATGAATCACATATTCCCTATATTCTTCAGTTTTTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTAACAAAGATGAAATTTCGCCATCCTGTACCAGACTCTTCTCACAAGAAATCAAGTATTTATAGCGAGCACATAATGGCAGACTCAGGTGCTGATGTATGTTTGGAGTCAAAGATGTGGATATCTTCCACTGTCCCATCTGATTGGATGTGGTCACCTGCCGATGACTTTGGTGCTTCATCAAACAATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCAATTTATAATGTATTCATCTCTCTCACAAACATGCTCGGATGTGAAAATGGTTCAATCACTTGTACCTATATGGGAGGAACAGCAGAAAAGGACTGGAGTTAATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAGCTTCTTTCTGCTGGTATTGACTTTGAGAAAAGACTTATTGAATTGTGTAACATAGCTGGAACCACTGTGACTTTAACTCCTTCTCAGAAAGAATTAAGAGAAACAGATATAATAGGCTCAGCATCACCACCATGTTCATTAAATGATGCCAAAATACACGAAGATGGGGGTGATAACAGCTTCAGTTTGTTGCCTGTGGGCAAAATGCATTCATCTGAAATAATTGGATCGTCGGACATAAAGGCTGCAGAAAGGGAAGCCCAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATTAACTCTGATGATGAACTTGTTTGTGAAATGATGCTGAGTCCCCAGCTACCAGATGCAACGATTGATAAACTGCTGGAGAAAGTTAATATGCAATATGAGAGTGAGTCGCAAAAGGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTGTCGTTCAATTGATCATGGTGATCCTATTGAAGTGTCAACTGAGAGTATAATACCCCAAGTTGATGGTTCAGCTGATGATGAATATTCAATTCCATTTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCTGTCTGAGTACCATGTCATGCACAGCACTGATACAGCCGTAGTTAGTAAAGATAAGAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAACTGCAAAGGAGAACAAGCTATAATGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGGAGATTCTACTGATTCTGATAATGGGGTTAGAAAGAGTGCCTGTATTACAAGAAATGTGGGCAGAACTGTTTCAGAATCAAAACAACAGAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATGCGATTCTGGGACAACTAAAAAGCTTGTTTTGGACAGGCATGAGGGATCAAATATCTGCCTTTGGAAAAAACGAATGGATTTGAGCACAATTCAAACCAACGAGGAAGAAACAAAACTCCTGAAAAATTGTGATCTTAAACTGACCAATCATGATAATTTAGTGAGTCGGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGATGATATGCAAAGCGATGAATGTTTTTCTGAAAATGAAATGGAGGCTCCAGAAGCAAGTGATCTGTTTAGGACTTCTGGAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTTTCCAGATGTTCAGTTAATGAGAACAGATACCAATTATAAAATCATAACTCCTGAGAGGTGTCAACAAACTTATTCTGCATCTTCAAGCAGTGTACAGAACTTATCCATTGATAATAAAGTGTTATGCAAGCCTAATTGCACGAATCAGGATTCTCATGGCAGCATATCTTTTGCACAAGAAAGCCAAATTCCAGCAAGTCACACACGAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAACATGGTGTAAATTTACTGGGTGAGAAGACTATTGTCTCAGAGTCTATTGATGATGACTTGAAGGATAAACACATGGAATTAACTGAAGTAAGTGTAGCTAAGGAAACCTGCTCAACTGACAAGAATCTTGAAAATCTTTTACCCTTGCCAACCATGCCTGATTCCCATTTACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAGATGAAGACTTGGAATAAATATGTTGCAATTAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATCCACTATCAAAATGATGGCTCTCACGTATACGTGCTTACACCTAATATTTTGCCTCCGTCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGAAGTAGAGGCCAAGGATGTGCCTGAACACACTTCGGGACCTACTCTCCAGCCAAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCAGTTAAACCATCATGCAATAATGAAGGACAAACAGAAAGAGTGAAGGCAAGTGCAGATGGTTCACAGGATAATTCACAGATATCAGGCCCTATGAGGAAATCAAATTCTACCCCTCTGAGTCAAATTGGCTTTCGAGACCCTTCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTCCTTGCTGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGACGCTATCAACATTGTAGCTCTTGGTTTTCAGAATGATTGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAATAAGTTTGAACCTTGTCAGAGAAGTTTTGATGGCTTAGTAGGCTGCAAAGTGTTGGTCTTTTCTGATGAAAAACACTTGTTAAAGGAGTTTATAAATATTGTCTCTTCATCTGACCCTGATATTTTGATGGGCTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACGCCTTGGTTTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATCGGTTGCTTCTGAAGATGTGAAAATTTCCGGAAAAGGTATCTTGGAATTTGACGATCCTGATACTCCTAGTATAGATTGTTGTGTACAAGGAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGCGGAGAAGTTAAGCTGAACTTATATTCAATTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCTTTCACTACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTGTAGAAAGAACAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTATCACGTGGTTCACAATATCGGGTTGAATCCATGTTATTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCTCTAGTTATGGAACCCGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTTCAATCTTTATATCCATCTATGATAATTGCATACAACCTTTGCTTTTGTACGTGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGGTCAGTTCATTTTCGCCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAGTTGGCTCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTGGCATTGAAGCTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCGATCTCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTACGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGAACAAATCGAACCTGTTTTTGATGCTAAAGGTATTGAGACAATCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTTTTTCAGCATCAGGATTTATTGGAGGTCAAATGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTCGTCTTTGCAAAGGAGGTTCGTCTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGATCTGATCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGTGAGCCTGGAGCCCGCCTGTCTGATATGGTTGTGGATCCATTAGAAGTCTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTAGCCTTGTTGGCGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGTCCTGTAAGGGAAGCATCTATAAAGAATAAGTTCTCTTCAAATTTTCAGAGAACCAGAATTGATTATTACTATCTCTCGAAACATTGTATAGTATGTGGGCAGTTGGTCCAGGCTTCAGCACGTTTGTGTAGTCAATGCTCCAAAAATGAAGCAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCTAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGCGGCGGTGATAGGCTTCTCGAAAGTGGGGTGAAGTGCACGTCCATTGCATGCACGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTATTTGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 5802 0.4133 MTDSQSNSEIFSVRIVSIDYYMAPPIQGADICYSSFHGGKVKEVPVIRVYGSTPSGQKTCLHIHRALPYMYVPCSDIPLQPDQEGDAYTYKVAASLEKALQLKGSAGSTRQHVHGCSLVRARRFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKCLQPHESHIPYILQFLVDYNLYGMGHLHLTKMKFRHPVPDSSHKKSSIYSEHIMADSGADVCLESKMWISSTVPSDWMWSPADDFGASSNNKPYCPKRQSTSELEGDASVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGVNEATMPPDPGKPLPEDVMKLLSAGIDFEKRLIELCNIAGTTVTLTPSQKELRETDIIGSASPPCSLNDAKIHEDGGDNSFSLLPVGKMHSSEIIGSSDIKAAEREAQHLLKWLATSQAAEDINSDDELVCEMMLSPQLPDATIDKLLEKVNMQYESESQKECQDILDSVDDMLELKFSKQKPCRSIDHGDPIEVSTESIIPQVDGSADDEYSIPFASLAETSSAAERNSESRRLSEYHVMHSTDTAVVSKDKRSKQWGSLPFSVADKVNCKGEQAIMQVTCPFESQSGDSTDSDNGVRKSACITRNVGRTVSESKQQRFVNCSLRDLMRRKRSFRVEQTECDSGTTKKLVLDRHEGSNICLWKKRMDLSTIQTNEEETKLLKNCDLKLTNHDNLVSRKLPLPDGKDSFLQDDMQSDECFSENEMEAPEASDLFRTSGNQGSLVYMPNPFPDVQLMRTDTNYKIITPERCQQTYSASSSSVQNLSIDNKVLCKPNCTNQDSHGSISFAQESQIPASHTRVLLNERVDNKKHGVNLLGEKTIVSESIDDDLKDKHMELTEVSVAKETCSTDKNLENLLPLPTMPDSHLHLDEESCDEMSGNALDVFLPISTKDSQKEMKTWNKYVAIKAPRSHGKKDVAIHYQNDGSHVYVLTPNILPPSVTSVQRWLSLDERDHTSQETEVEAKDVPEHTSGPTLQPKLYDDSSAEKKPVKPSCNNEGQTERVKASADGSQDNSQISGPMRKSNSTPLSQIGFRDPSSVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVALGFQNDCDSIIEVLVLLHNKFEPCQRSFDGLVGCKVLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASRLGLGLLNSLSRTPSDSSVASEDVKISGKGILEFDDPDTPSIDCCVQGSSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPFFHYKVLTRWFSSGPGRARYRCIKYVVERTKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETIRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFSLVGADLIQWFLEMPRPVREASIKNKFSSNFQRTRIDYYYLSKHCIVCGQLVQASARLCSQCSKNEAAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSIACTVFYERRKVQKELFAATDVAAEKGFYPKCTVEWF* 1934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0613 1933 MobiDBLite consensus disorder prediction 1018 1064 - -
Amo16g0613 1933 Pfam DNA polymerase family B 1340 1788 IPR006134 GO:0000166|GO:0003677
Amo16g0613 1933 CDD POLBc_zeta 1347 1794 - -
Amo16g0613 1933 Pfam DNA polymerase family B, exonuclease domain 1132 1199 IPR006133 -
Amo16g0613 1933 Pfam DNA polymerase family B, exonuclease domain 54 198 IPR006133 -
Amo16g0613 1933 Gene3D Palm domain of DNA polymerase 1385 1630 IPR023211 -
Amo16g0613 1933 Gene3D DNA Polymerase, chain B, domain 1 30 196 - -
Amo16g0613 1933 Gene3D - 1641 1802 IPR042087 -
Amo16g0613 1933 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1926 IPR030559 GO:0006281|GO:0016035|GO:0019985
Amo16g0613 1933 PRINTS DNA-directed DNA-polymerase family B signature 1399 1412 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo16g0613 1933 PRINTS DNA-directed DNA-polymerase family B signature 1508 1520 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo16g0613 1933 PRINTS DNA-directed DNA-polymerase family B signature 1564 1572 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo16g0613 1933 Gene3D - 1104 1382 IPR036397 GO:0003676
Amo16g0613 1933 Gene3D Helix hairpin bin 1465 1525 - -
Amo16g0613 1933 CDD DNA_polB_zeta_exo 1071 1321 - -
Amo16g0613 1933 SMART polmehr3 1072 1578 IPR006172 GO:0000166|GO:0003676|GO:0003887
Amo16g0613 1933 MobiDBLite consensus disorder prediction 981 996 - -
Amo16g0613 1933 ProSitePatterns DNA polymerase family B signature. 1566 1574 IPR017964 GO:0000166|GO:0003676
Amo16g0613 1933 SUPERFAMILY DNA/RNA polymerases 1386 1798 IPR043502 -
Amo16g0613 1933 Pfam C4-type zinc-finger of DNA polymerase delta 1832 1905 IPR025687 -
Amo16g0613 1933 SUPERFAMILY Ribonuclease H-like 27 1345 IPR012337 -
Amo16g0613 1933 MobiDBLite consensus disorder prediction 981 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0613 Amo-Chr16 9993306 10005994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0613 39 195 Core DNA Replication Machinery Family AT5G63960 25.309 4.42e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0613 K02350 - gmx:100777934 2800.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0613 16 9993306 10005994 Amo16g0613 16 9993306 10005994 ECH