Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0609 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGATAACACTAACAGCAGAGTAGTAGAAGGAGGAGATGCATCACTATTGTTACTTAATAAAAATAAACAGCAATCAGAGTCAGAGATACTTGGTGGTGGTAACTTCCATAGTCCAAATTCTCATTCTTCAACCATCACTACTAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCACAACCACAACCACCACCGCCTCCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACGCTGGTGACTACAAACCGGTTCATATGTGAGATCTGCAACAAAGGTTTCCAAAGGGATCAGAACCTTCAACTGCACCGGAGAGGGCATAACCTGCCATGGAAGCTGAAACAGAGAAGCAGCAGCGAAGTGCGGAAAAGGGTGTACGTGTGTCCGGAAGCGTCGTGTGTGCACCACAATCCTGCTCGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAATGCAACAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCATTCCAAAATCTGTGGTACCAAAGAATACAAATGTGACTGCGGCACCGTCTTTTCCAGAAGAGATAGCTTCATAACCCACAGAGCTTTCTGTGACGCACTGGCTGATGAGAATAACAAAGTGAACAATGAAGGAGGAGTACTTGGACATTTTCCAAAGATAGGCTCCAACTTATTGCAACCATTAATCCCAAACCTAGTTGCATCATTACCAATCACTCGCAATAACACTAGTAGTAATAATAGTAACCCACACATTATTTCTACTTCCGAATTCAAGCAGCATCCATCATTCCCTCATGAACTCGTGCCAATGTCAATGCCTGAACAGAAACCCTTCATCAACACCACCACAACCACCAACAACCACCTAATAAACCCTTCATCACTGCCCTCTCTTCAACTGAACTCACCACATTCTCCGCTAAACATGTTCGATGAGAGTGGTGGGGTCCATTTAGCTGCAGGGTTACCTCACATGTCCGCCACGGCATTGCTTCAAAAAGCTGCACAAATGGGTGCAACAAGCGTGAGCAATAATAACAATAACACTAGCATGGCACCCCCGTCATTTGCTTCTTCCAATAATGGGATCATCATGGAACACTTCATGCACAATGCTCATCCTCAACACGATAATATTTCATCGTCTCAGTTTAATAATAACAATAATTTCAACGGGAGCGTTGGAATGAACGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAACAGAAGCAGTGGATTCAGTATCCCCCCGGTGAGTGGTAGGAGTAGTAGCACCATTAATATTGGTGGAGCTAAGGGAAGTGAGGATGTAATGACTCTCGACTTTCTGGGAATCGGAGCGGGAGGTGCTGGTGGTGGTGGCGGCGCCGGAGATGGTGGTGCCCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1569 0.4525 MSNITSCDSGSFSTDNTNSRVVEGGDASLLLLNKNKQQSESEILGGGNFHSPNSHSSTITTNNSSSNASNANSQPQPPPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSSEVRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCNKKYAVQSDWKAHSKICGTKEYKCDCGTVFSRRDSFITHRAFCDALADENNKVNNEGGVLGHFPKIGSNLLQPLIPNLVASLPITRNNTSSNNSNPHIISTSEFKQHPSFPHELVPMSMPEQKPFINTTTTTNNHLINPSSLPSLQLNSPHSPLNMFDESGGVHLAAGLPHMSATALLQKAAQMGATSVSNNNNNTSMAPPSFASSNNGIIMEHFMHNAHPQHDNISSSQFNNNNNFNGSVGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVSGRSSSTINIGGAKGSEDVMTLDFLGIGAGGAGGGGGAGDGGAHGYFGIGPLA* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0609 522 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Amo16g0609 522 Gene3D Classic Zinc Finger 90 160 - -
Amo16g0609 522 SUPERFAMILY beta-beta-alpha zinc fingers 110 207 IPR036236 -
Amo16g0609 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 54 498 - -
Amo16g0609 522 MobiDBLite consensus disorder prediction 73 87 - -
Amo16g0609 522 MobiDBLite consensus disorder prediction 41 95 - -
Amo16g0609 522 Pfam Zinc-finger double-stranded RNA-binding 111 133 IPR022755 -
Amo16g0609 522 Gene3D Classic Zinc Finger 165 245 - -
Amo16g0609 522 SMART c2h2final6 152 182 IPR013087 -
Amo16g0609 522 SMART c2h2final6 111 133 IPR013087 -
Amo16g0609 522 SMART c2h2final6 187 207 IPR013087 -
Amo16g0609 522 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 54 498 - -
Amo16g0609 522 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g0609 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 133 IPR013087 -
Amo16g0609 522 MobiDBLite consensus disorder prediction 41 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0609 Amo-Chr16 9868590 9872558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0609 56 244 IDZ Gene Family AT3G50700 77.778 5.85e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g0609 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0609 - - gmx:100813556 523.857