Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0585 ATGGAAGCTAATAAGAAGAATAAGGTAAAGAAATTAGGATCAGGCAGTATAGAAGAAGAAGAAGTGGAGAATGATAAAGGTATGATAAGAAAAGGTCCATGGAGCGTTGAAGAAGACGTGATTCTGAGCAATTACGTGGCCACTCATGGTGATGGTCGCTGGAACGCCCTCGCCCGCTCTGCAGGACTTAAGAGGTCCGGGAAAAGTTGCAGGTTGAGATGGCTAAATTATCTTCGTCCTGATGTTCGCCGCGGAAACATCACACTCCACGAACAAATCACCATTCTTGATCTTCATTCACGCTGGGGAAATAGATGGTCAAAAATTGCGGAGCACTTGCCAGGAAGAACGGACAATGAGATAAAGAATTATTGGAGGACCAGAGTGAGTAAGCAGGCAAGGCAACTCAACTGTGACGTCAATAGCAAAATATTCAGGGACGCCTTGCGTTATGTTTGGATGCCTCTTTTGCAAGAGCGACTTCAATCGAACTCGCAAATGGAGCATCCAAACGCAACACAAGCCTACTCCTCGGACTCATCATCATCAGCATCCCTTGGCATACAACAATTCTGTTCTGAATCTGATCAACAAGTGATGAGTAATCATGGTGTTTTGGTGCATAGTATTGTTGAAGATGAGCCCGGAATATGCCCGAGTATGAATAACGAAACGTTTGAATATACCAATATACCCTTGGGGGATAGTGGGGACTTAATGCTGGAGAGTTTGTGCAACAACGATGACAACATATATGGCTTCTGTCACGACTTTGTCATGACCTTGGAATAA 792 0.4419 MEANKKNKVKKLGSGSIEEEEVENDKGMIRKGPWSVEEDVILSNYVATHGDGRWNALARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLHEQITILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVSKQARQLNCDVNSKIFRDALRYVWMPLLQERLQSNSQMEHPNATQAYSSDSSSSASLGIQQFCSESDQQVMSNHGVLVHSIVEDEPGICPSMNNETFEYTNIPLGDSGDLMLESLCNNDDNIYGFCHDFVMTLE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0585 263 PANTHER MYB TRANSCRIPTION FACTOR 17 211 - -
Amo16g0585 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 211 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo16g0585 263 Gene3D - 31 83 - -
Amo16g0585 263 SMART sant 83 131 IPR001005 -
Amo16g0585 263 SMART sant 30 80 IPR001005 -
Amo16g0585 263 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g0585 263 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Amo16g0585 263 CDD SANT 88 127 IPR001005 -
Amo16g0585 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Amo16g0585 263 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Amo16g0585 263 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Amo16g0585 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Amo16g0585 263 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Amo16g0585 263 Gene3D - 88 132 - -
Amo16g0585 263 SUPERFAMILY Homeodomain-like 30 125 IPR009057 -
Amo16g0585 263 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0585 Amo-Chr16 9370941 9372788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0585 29 200 MYB Transcription Factor Family AT2G47190 60.674 8.33e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g0585 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0585 K09422 - gmx:100797220 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0585 16 9370941 9372788 Amo16g0585 16 9370941 9372788 ECH