Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0572 ATGGTGAATTTCAGCGGAGACCCTCACAGTTACACTCAACCTCAAACCCAAGACAACAGCAACCACTTCAACCACCCTAACGGCAACTACAACTGCCACAACGGGGTCAATGCCTTCCCCAACCCTAACCCAATCGATTCTCCTGCTTCTGGATATGCTCCTCCTAACCATTCACGTCCACCCCGCAAGCGAGCTTGGACTTCTACTTCTCCAGATCAAGCAGATGGTGCGTGTCATGTAAAAGTTTATGTTGCACCGGTTCCAAGAACAGCTACCGAGACTGATATCCGCCTGGTGTTTGAAGGGTATGGGACTATTGTTGAGGTTGTTCTTTTAAAAGATAAGAGAACTGGTGGACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAGATGAAGCTGAGAGAGCCATTAAGGCTTTAAACAATAAGTATACATTTCCTGGGGAATCATCTCCTGTTGTTGTCAGATATGCTGATCGGGAACGTGAACGGCTTGGGGTTCGAACATTTGTACGGAACGTGGAAAAGAAAGATCCTTCAGAAGAGGTTGCTGATAAAGTATTTGTTAGTTGCATCAACAAAGAAGCTTCGAGAAACGAAATAGAAGAAATATTTTCTGCTTATGGAAATATAGAAGATGTCTTCCTGCACAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCGTTGGCGGCAATCAAAGGGCTGAACAACACATTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGAGCCAAAGAAACCAAAGACTGGAGATCCAAGAGGCAACTTTTTAAATGGGAATGGAAATTTTGGTCCCCTTCCTCAGGAATCAGCAGTTTGGCCAGTGCCAAATTTCGGTGATCCAAATACTAGAGGAAGTATTATGCCTATGGCTCCACATCGTTCTACAATTGCACACCCACAAGTTTCTTCTCATATGCAGAATTGGGAACCTGGGGCTAACATGGTGCCCCAGCCATTTCCTATCCAACAGCCACATTCACAATTGACTTCGATGCCTTTGCAGTGCAATCAAGCTCCAAAGATGTCTTCTCAACCATTTTATCCTGAGGTGCAGAGACAGTTGCATCCAACAGATATGTCAGTGCAAAATATAGAGCAGCAGCCAAGTTCACAGACACCTACTCAGAGTGTAAGCAATTCTAATACAGTTGCTGGCAGTACTTCACCTGATATGCCTACTAGTCCTGTAGATGAAGATTTTCCCGAGTGTGACTGGAGTGAGCACTACTGCCCTGATGGTCATACTTACTACTACAATTGCGTCACTTGTGAAAGCAAATGGGAAAAACCTGAGGAGTATGCTCTCTATGAGAGAGGGTCTCTGAAGCAGCAAAAGCATGAGGATCATAAAGAATCGCAGGAGCTGCAGGAGCACGATGATCATAAAGATTCGCAGAAGCTGCAGGAGCTCGAGGATCATGAAGATTCACGGAACCTGCAGGAACACGTGAACCATAAAGATTTTCAGAAACTGCAAGAGCACGAGGATCATAAAGATTTACAGAAGCTGCAAGAGCACGGGAATCATAATGATTCATGGAGGCAGCAAGAGCACGGGGATTATAATGATTCACGGAAGCAGCAAGAGCACGAAGATCATAAAGATTTGCAGAGGCCGCAGGAGCACGAGGATCATAAAGATTTGCAGAGGCTGCAGGAGCATGAGGATCATAATGGTTCACAGAGGCAACAAGGGCACGGGGATCATAATGATTCACAGAAGCCACAAGAGAACGAGGATCATAAAGAATCACAGCATCAGCAAGAGCATGAGGATCATAAATATTCACAGAAGCAGCAAGAGAACGAGGATCATAAAGAATCACAGAAGCTGCAAGAGCTTGAGGATGACAGCTGTCTTTTGTCACAATTATCATTATCCTCCTCTGCACAAGTTGCTCAAAGCCAAAAGGAAACAGATAATGATCAAGGGCACTCAAAAGCAAGTTCTGTTGTTGGACAGGGGTGA 2019 0.4428 MVNFSGDPHSYTQPQTQDNSNHFNHPNGNYNCHNGVNAFPNPNPIDSPASGYAPPNHSRPPRKRAWTSTSPDQADGACHVKVYVAPVPRTATETDIRLVFEGYGTIVEVVLLKDKRTGGRQGSCFVKYATLDEAERAIKALNNKYTFPGESSPVVVRYADRERERLGVRTFVRNVEKKDPSEEVADKVFVSCINKEASRNEIEEIFSAYGNIEDVFLHNRGYAFVKFSNREMALAAIKGLNNTFTMRGCDHPLIVRFAEPKKPKTGDPRGNFLNGNGNFGPLPQESAVWPVPNFGDPNTRGSIMPMAPHRSTIAHPQVSSHMQNWEPGANMVPQPFPIQQPHSQLTSMPLQCNQAPKMSSQPFYPEVQRQLHPTDMSVQNIEQQPSSQTPTQSVSNSNTVAGSTSPDMPTSPVDEDFPECDWSEHYCPDGHTYYYNCVTCESKWEKPEEYALYERGSLKQQKHEDHKESQELQEHDDHKDSQKLQELEDHEDSRNLQEHVNHKDFQKLQEHEDHKDLQKLQEHGNHNDSWRQQEHGDYNDSRKQQEHEDHKDLQRPQEHEDHKDLQRLQEHEDHNGSQRQQGHGDHNDSQKPQENEDHKESQHQQEHEDHKYSQKQQENEDHKESQKLQELEDDSCLLSQLSLSSSAQVAQSQKETDNDQGHSKASSVVGQG* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0572 672 PANTHER RNA BINDING PROTEIN 62 472 - -
Amo16g0572 672 CDD WW 420 449 IPR001202 GO:0005515
Amo16g0572 672 Gene3D - 69 167 IPR012677 -
Amo16g0572 672 MobiDBLite consensus disorder prediction 379 416 - -
Amo16g0572 672 Gene3D - 403 476 - -
Amo16g0572 672 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 62 472 - -
Amo16g0572 672 MobiDBLite consensus disorder prediction 632 672 - -
Amo16g0572 672 MobiDBLite consensus disorder prediction 457 631 - -
Amo16g0572 672 ProSiteProfiles WW/rsp5/WWP domain profile. 422 449 IPR001202 GO:0005515
Amo16g0572 672 Pfam WW domain 420 447 IPR001202 GO:0005515
Amo16g0572 672 Gene3D - 173 266 IPR012677 -
Amo16g0572 672 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 161 IPR000504 GO:0003723
Amo16g0572 672 SUPERFAMILY RNA-binding domain, RBD 53 169 IPR035979 GO:0003676
Amo16g0572 672 MobiDBLite consensus disorder prediction 457 672 - -
Amo16g0572 672 SUPERFAMILY RNA-binding domain, RBD 180 270 IPR035979 GO:0003676
Amo16g0572 672 SMART ww_5 417 449 IPR001202 GO:0005515
Amo16g0572 672 SUPERFAMILY WW domain 421 452 IPR036020 GO:0005515
Amo16g0572 672 MobiDBLite consensus disorder prediction 323 342 - -
Amo16g0572 672 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 245 IPR000504 GO:0003723
Amo16g0572 672 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 147 IPR000504 GO:0003723
Amo16g0572 672 Coils Coil 614 634 - -
Amo16g0572 672 MobiDBLite consensus disorder prediction 1 73 - -
Amo16g0572 672 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 260 IPR000504 GO:0003723
Amo16g0572 672 MobiDBLite consensus disorder prediction 379 410 - -
Amo16g0572 672 SMART rrm1_1 81 157 IPR000504 GO:0003723
Amo16g0572 672 SMART rrm1_1 187 256 IPR000504 GO:0003723
Amo16g0572 672 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0572 Amo-Chr16 9214235 9220629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0572 82 283 Eukaryotic Initiation Factors Gene Family AT1G71770 27.650 1.34e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0572 K13207 - gmx:100776162 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0572 16 9214235 9220629 Amo16g0572 16 9214235 9220629 ECH