Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0570 ATGGAGAAGAAGGAGATAATGATGAGTGTGAAGATGGAAGATGCATCATCACTATTCAGCAATAACATTCCATTATGGAGCGTGTTTGATTTGTGTCAAGAAACAGAGGAGAAGGGTTCTTTAGGGTTTATGGATCTACTCGGTGTGCATCAAGACTACTACAACGGTGGTGGTGGTGGTGGTGCTCCTCTGCTTGCTGATAATAATTCTCCATCTCAGGTAACTGTGAAAGAGTGTCCTTCAAATTCAGAGACTACTCAACAGCAACCTCCTACTACTCCAAAGTCTTCAACTACTACTTCAGCATCACCTCTTTCATCATCCGTGTCCACCACTACTACTGTGGACCAAGCTGCACCGTCATCTCAACACGCCGACAAAGTGTTGAAGGCGAAGAAGACAAATGGGAAGAAAAGAGAGAGGGAAGCTCGATACGCGTTCATGACAAAAAGCGAGGTGGATCATCTCGAAGACGGTTACAGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCCTTTCCAAGGAGCTATTATCGTTGCACCAGTGGATCATGTAATGTGAAGAAGCGTGTGGAAAGGTCTTTCACTGATCCAACAATTGTGGTCACAACATATGAAGGTCAACACACACATCCAAGTCCACTTCTAATGCCTCGCTCTTCATCATCATCATCATCAATGCCTCAAACCTACTTCTCCCACCAACACTATCTACACCCACATCATCAACAACTCTTATTTAATACATTCCCTTCTCTTGATTTTCCTCCTCCTCCTCCTCCTTCTTCATCTCAGGACACCACCAATAACAATGCATTATTTCCTCTAAGCGACCATGGCCTTCTTCAAGATGTTCTTCCTTCACACATGTTCAAGCAAGAGTAG 891 0.4411 MEKKEIMMSVKMEDASSLFSNNIPLWSVFDLCQETEEKGSLGFMDLLGVHQDYYNGGGGGGAPLLADNNSPSQVTVKECPSNSETTQQQPPTTPKSSTTTSASPLSSSVSTTTTVDQAAPSSQHADKVLKAKKTNGKKREREARYAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSGSCNVKKRVERSFTDPTIVVTTYEGQHTHPSPLLMPRSSSSSSSMPQTYFSHQHYLHPHHQQLLFNTFPSLDFPPPPPPSSSQDTTNNNALFPLSDHGLLQDVLPSHMFKQE* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0570 296 MobiDBLite consensus disorder prediction 62 141 - -
Amo16g0570 296 MobiDBLite consensus disorder prediction 251 277 - -
Amo16g0570 296 Gene3D WRKY domain 140 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g0570 296 MobiDBLite consensus disorder prediction 126 141 - -
Amo16g0570 296 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0570 296 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 258 IPR044810 GO:0003700
Amo16g0570 296 PANTHER WRKY TRANSCRIPTION FACTOR 2 258 - -
Amo16g0570 296 MobiDBLite consensus disorder prediction 66 121 - -
Amo16g0570 296 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0570 296 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0570 296 MobiDBLite consensus disorder prediction 211 231 - -
Amo16g0570 296 SUPERFAMILY WRKY DNA-binding domain 148 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0570 Amo-Chr16 9166434 9168866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0570 124 296 WRKY Transcription Factor Family AT2G47260 53.299 2.10e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g0570 WRKY 2.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0570 - - aip:107646061 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0570 16 9166434 9168866 Amo16g0570 16 9166434 9168866 ECH