Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0558 ATGGACGCCAATGTATCCACTAAACTTGAATCAGAAGAAACTTCTGAGGAGCTCAAATCATCAGAAACTCAGGCATCCAAGAAAAGGAAAATGGTTGAGAAAACTGTTGTGAGGGTGAGGATAGGAGAGGGAAACAATATCAGCAGACTGAAGAATGAAGGGCTACCTTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAGCCAATCAAAGGGTCTCCATATCCAAGGGGTTATTACAGATGCAGCACGTCAAAGGGTTGTTCAGCGAAGAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATCACATACACCTCTACACATAATCACCCTTCTCCTGATGCAATAATCTCCACCCAGAATTTATCACAAAAACCAAAAGAACAAGAAGCTGGAGAAACCACAGAAGAAGAACTATCAAAGGTGGAAGAACAAGAACAAGAACATGAACATGAGCATGAACAGGTTGAAGAAGAACACAGCACGGATCATGAGAAGCCAAGTACTACTACTGTGTCTATGGCCACGGCTGATGAGAAGAGTTTCCATTACTTGCAGTCTCCAATAAGCAGCCATGAAGATATTGTTGTTGTAGACCAAGAAGATCCATTCAAGCTAAGCAGTGAGAAAAGCCATGAAAGAATAGATCTTTTGTTAGAAGAGGAAGAGCCACTATGCTATGCACAGATCAAGAACTTGACAACGAAAAAATCAGATGAACTTGATTTCTTCGATGAGCTTGAGGAGTTGCCCATGTCTTCACCTTTCTTGCACTTCACGAGGAGCATTTTATCCGATGAAAGGATTCCCGTTTTTCCTTCTTGA 837 0.4158 MDANVSTKLESEETSEELKSSETQASKKRKMVEKTVVRVRIGEGNNISRLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPSPDAIISTQNLSQKPKEQEAGETTEEELSKVEEQEQEHEHEHEQVEEEHSTDHEKPSTTTVSMATADEKSFHYLQSPISSHEDIVVVDQEDPFKLSSEKSHERIDLLLEEEEPLCYAQIKNLTTKKSDELDFFDELEELPMSSPFLHFTRSILSDERIPVFPS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0558 278 MobiDBLite consensus disorder prediction 124 183 - -
Amo16g0558 278 Gene3D WRKY domain 43 118 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g0558 278 SMART WRKY_cls 56 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0558 278 Pfam WRKY DNA -binding domain 58 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0558 278 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g0558 278 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 14 263 - -
Amo16g0558 278 SUPERFAMILY WRKY DNA-binding domain 52 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo16g0558 278 ProSiteProfiles WRKY domain profile. 51 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo16g0558 278 Coils Coil 136 163 - -
Amo16g0558 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 263 IPR044810 GO:0003700
Amo16g0558 278 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0558 Amo-Chr16 9010418 9012121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0558 27 117 WRKY Transcription Factor Family AT2G34830 68.132 1.85e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo16g0558 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0558 - - adu:107492378 480.715