Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0556 ATGGGGATTGAGCCTCTTTCCTCCACACCATTCAATTTCAGTGGATTCCAAGGCGGTTATGATTCTGTTAATATCCATGAAGAGAAGTTTGTGTTACAAGAGAAGCAAGGTTTCTCAGCATTAATGGAATTAGATAGAGGAGATAATCTGTTCAAACATCAGCAACACAAGCATGATCATGATGATGAAGATATCAAAGTTGGTGACATGATCCTACAAGATGTCATCAATTTTGACCCTGATTATGATAGTCTCCAACCAACTTCACAAGAGTTTCAAGAAACAATAGAATTCAAGAATATTCATCAGGCACCGTCGTCTTTGACAATAGCATCGTTGGAGCTCTTGAGAAACTATGGAAGCAAGTTCAAGAAGCTAACCGGGGAAAACATAAGCGATAACTTCAGCAGCGACAACATCGAGAATAGTACTTGTTCGGAGAATCAAAGATTGTCAACTGAAGAAATCATGAGAGTTGCAGGGGCAAGGTATGTGCATTACTCTGCACACTGGAACGATGATTTCTGCATCCCCATGCACCCTTATGGATTGGATCTTGGAAACTTGTCGGAAGAAGAGAACAGAGATGTGGAGCTTGCTCAGTTTCTTCTTGCAGCTGCAGAGAGAGTAGGGTGCCGGCAATTCGAACGTGCCAGCCGCTTACTCCTCCATTGTCAATGGAATTCAGATGTCATCGCAAACGCTGCTCAGAGAGTTATCTTTCACTTCGCCGAAGCGCTTCGCGAAAGGATCAAAAAAGAAACCGGAAGGGTAACCGCCATTGGAACTTGCGCAGAGAAGAAGAAAATAGAAGGTACAGGACAAAGGTTAACGAGTTTTGCTGAGTCACTGAACTTGCCGTTTTCATATAAGGCGATTATCGTGACAGATTTGGCAGAAATCAAGTTGGATGATTTCGACGTCGACGACGATGAAGGCGTTGCTGTGTACTCTGCGTATTTTCTTAGGACTCTGGTTTCAAGGCCTAATTGCTTGGAAAATTTGATGCTGGTTATAAGGAATATAAAACCGTCAATTATGATAGTGCTGGAGATAGACTCAAATCATAACTCGCCTTCTTTTGTGAACCGATTCATCGATGCGTTGTTCTACTTTTCAGCATTCATGGATTGTCTTGAAACGTGCCTGAAAGAAGATAGCGAGTGCAGAATGGCGGTGGAAGCAGTGTGTGCCGCGGGGATAAGAAACATTGTCGCTGCTGAAGGCAAAGAAAGGACAGTTAGGAATGTGAAGTTAGATGTTTGGAGAAGGTTCTTCGCGAGGTATAAAATGGTGGAAACAGGGTTCAGTGAATCGTCGCTTTACCAAGCTAACTTGGTTGCTAAGGAGTTTACTTTTGGTAAGTTCTGCAGCGTCGACAAAAATGGTAAGAGTCTAATTGTTTCATGGAAGGGAGCTCCAATGCATTCACTCTCAGCTTGGAAGTTTGTATGA 1455 0.4289 MGIEPLSSTPFNFSGFQGGYDSVNIHEEKFVLQEKQGFSALMELDRGDNLFKHQQHKHDHDDEDIKVGDMILQDVINFDPDYDSLQPTSQEFQETIEFKNIHQAPSSLTIASLELLRNYGSKFKKLTGENISDNFSSDNIENSTCSENQRLSTEEIMRVAGARYVHYSAHWNDDFCIPMHPYGLDLGNLSEEENRDVELAQFLLAAAERVGCRQFERASRLLLHCQWNSDVIANAAQRVIFHFAEALRERIKKETGRVTAIGTCAEKKKIEGTGQRLTSFAESLNLPFSYKAIIVTDLAEIKLDDFDVDDDEGVAVYSAYFLRTLVSRPNCLENLMLVIRNIKPSIMIVLEIDSNHNSPSFVNRFIDALFYFSAFMDCLETCLKEDSECRMAVEAVCAAGIRNIVAAEGKERTVRNVKLDVWRRFFARYKMVETGFSESSLYQANLVAKEFTFGKFCSVDKNGKSLIVSWKGAPMHSLSAWKFV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0556 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 50 260 IPR005202 -
Amo16g0556 484 Pfam GRAS domain family 257 482 IPR005202 -
Amo16g0556 484 ProSiteProfiles GRAS family profile. 190 482 IPR005202 -
Amo16g0556 484 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 257 482 - -
Amo16g0556 484 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 50 260 - -
Amo16g0556 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 257 482 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0556 Amo-Chr16 8992198 8994022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0556 244 483 GRAS Transcription Factor Family AT2G01570 31.148 1.24e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo16g0556 GRAS 5.7e-50 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0556 - - ahf:112695737 504.212