Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0549 ATGGCTCCGATCCAGCGCGCGTTGAGTTCGGGATCGGAAGGTAGCGGAGATCCACCGATAGTGTTGGACGAAAGGAAGAGGAAGAGGATGCTCTCGAATCGTGAATCTGCACGCCGTTCGAGGATGAGGAAGCAAAAGCAGCTGGAGGACCTCACCGAAGAGGTGACGAAGCTGCAGTCGGCGAATAAGAACCTGGCGGAGGCCATCAAGGCGAAGGAGGAAGCCATGACGGAGACTGAGGCCGCCAACGGCGTCCTTAGGGCTCAGATGACGGAGCTTACCGACCGTCTCCGGTTCCTCAACTCGATCCTTGAGATTGCCGAGGATGTCAGTGGACTTTCCGTCGATATACCTGAGATTCCGGATCCGCTTCTGAAGCCATGGCAGATCCCTCACCCGATTCAACCAATCATGGCTTCCGCAGACATGTTCCTGCATTGA 441 0.5624 MAPIQRALSSGSEGSGDPPIVLDERKRKRMLSNRESARRSRMRKQKQLEDLTEEVTKLQSANKNLAEAIKAKEEAMTETEAANGVLRAQMTELTDRLRFLNSILEIAEDVSGLSVDIPEIPDPLLKPWQIPHPIQPIMASADMFLH* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0549 146 CDD bZIP_plant_GBF1 26 75 IPR045314 GO:0003700|GO:0006355
Amo16g0549 146 SUPERFAMILY Leucine zipper domain 25 72 IPR046347 GO:0003700|GO:0006355
Amo16g0549 146 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Amo16g0549 146 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
Amo16g0549 146 MobiDBLite consensus disorder prediction 1 52 - -
Amo16g0549 146 Gene3D - 23 76 - -
Amo16g0549 146 Coils Coil 34 82 - -
Amo16g0549 146 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 70 IPR004827 GO:0003700|GO:0006355
Amo16g0549 146 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 144 - -
Amo16g0549 146 Pfam bZIP transcription factor 25 75 IPR004827 GO:0003700|GO:0006355
Amo16g0549 146 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 144 - -
Amo16g0549 146 MobiDBLite consensus disorder prediction 19 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0549 Amo-Chr16 8929959 8931664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0549 8 144 bZIP Transcription Factor Family AT3G62420 57.554 1.20e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo16g0549 bZIP_1 2.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0549 K25786 - gmx:778144 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0549 16 8929959 8931664 Amo16g0549 16 8929959 8931664 ECH
Amo16g0549 16 8929959 8931664 Amo19g1232 19 24777754 24779211 ECH
Amo16g0549 16 8929959 8931664 Amo19g1232 19 24777754 24779211 PCT
Amo16g0549 16 8929959 8931664 Amo09g0686 09 11171545 11172833 PCT
Amo19g1232 19 24777754 24779211 Amo16g0549 16 8929959 8931664 PCT
Amo09g0686 09 11171545 11172833 Amo16g0549 16 8929959 8931664 PCT