Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0548 ATGGTTTCTTCCCAAGCCACAACACGTAGAAGGAAGATTGAGATCAAGAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAGTTAGGGCTTTTCAACAAGGTCACAGAGCTCTCCATCCTCTGCCAGGCGGAAACCGCCTTAATCATCTCGTCGCAAAACGGAAAGCTTTACGCGTGCGGGTATCCCTCGCCGGATGCCGTGATCTGGCGTTTCCTCTATGGAGGAGATTCCTCGCCTCCGCAGAGGAACGACGTGCGATTCTTGAAGAAGAAGCAAAAGGAGAACGTGGAAGTTCAAAGGGCGCAGTACGAGTCTGCTCATGAAGCCCTCAAAGAAGAGAAGAAGCGACTCGACGAGACCAAGAAGGAAAGAAACAGCGACAACAATGGCGGTTGCTTAGGGTTTTCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTCAAGTTCAAAGAATCGTTGGAACAGTTGAAGACGAACCTGATTGCAGCCACTGACAATAAGATCAACATGTTCCAACAAATGATGATGCCGTCACCAGTTGCTGCTCCTTCTTCTTTAATCATGGCTCCAATGCAAACTAGGTTTTCCAATTTTAATTCACCTCTATCCCAACACCTCAAAACAAACACTACCTTAGAGTGA 672 0.4762 MVSSQATTRRRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIISSQNGKLYACGYPSPDAVIWRFLYGGDSSPPQRNDVRFLKKKQKENVEVQRAQYESAHEALKEEKKRLDETKKERNSDNNGGCLGFSQWWENPIDDMDLEELVKFKESLEQLKTNLIAATDNKINMFQQMMMPSPVAAPSSLIMAPMQTRFSNFNSPLSQHLKTNTTLE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0548 223 Coils Coil 98 132 - -
Amo16g0548 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
Amo16g0548 223 Gene3D - 21 134 IPR036879 GO:0003677|GO:0046983
Amo16g0548 223 Coils Coil 156 176 - -
Amo16g0548 223 PANTHER MADS BOX PROTEIN 6 178 - -
Amo16g0548 223 SUPERFAMILY SRF-like 9 77 IPR036879 GO:0003677|GO:0046983
Amo16g0548 223 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Amo16g0548 223 MobiDBLite consensus disorder prediction 107 131 - -
Amo16g0548 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 6 178 - -
Amo16g0548 223 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Amo16g0548 223 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Amo16g0548 223 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Amo16g0548 223 MobiDBLite consensus disorder prediction 107 133 - -
Amo16g0548 223 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0548 Amo-Chr16 8907694 8909177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0548 10 167 Type I MADS-box Gene Family AT5G60440 36.076 5.84e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo16g0548 SRF-TF 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0548 - - aip:107627188 401.364