Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0545 ATGAAGCCGTTCTTGTCGATGCCGTTAAGGCCTTGTTCATTTTTTCTCATACTGACATACTTTATTCTACTTGTGTCGTTGATACTATGCTCATATGTATTGTTCACACGCTTGGAGTATCATGTGAATTTAAATTCACATAAAGTTCTCTTTCAATTCCAGTCAGAAATTGAGGCATTGACAACACTCATACAACCCATGAATTATTCCTCCAAGAATTTAGCAAGATTTATAAATTCATCTCTCAATGCTACCAACATCTCATTCTCTGACATTAAAACCAAGGTCGCTCCATTATTATTTGAATCATTTGAGACGGTTCCTCAATTAGCCCAAATCTCATACATAGGAATGGAAGGTTACTTTTTTTCATTCTACAATGGTGATCATGGTCAACCTCTCGCAATATACTCAAATCGTTCAACATCTTCTTCCATTATTTCTAAGCATTATTATGTTCAGCCGGTGAATCCTGACAATGGAAAATTATATGGGAATGCAACAATATTTGATTCCTATGTTAATACAACTTGGGTTGGGGAAGCATTAAATGGTTCAAATGATGGATTTGTCACATTGGAAAAAAAGCTTAGCAATGATCAAGAATTCTTGTTCATTAGTTCATCAAGAATCACAAAAACAGGTTCAGTGATCTCTCTTGGAGTTCAAGCAACAAAAATAACTGATTTTTTCTTTAGTGTTATTAGTCATCATCAAGGTGCCATGTTGTATCTAGCTACAAAAGATGGACAAGTGCTTCAAGAAGGGATCAAGAATACTCATATGATTGTTTCTAAGAACGACACGGTTTCGTTTCAATATGTGAATAATCACACTAGTTATTATCAGGGTTCAGTTACATGCAAAAATGATGGTGAAGTTGTTGCTTCTACTTTGAAGATTCAGGGTGTTGAGTATTTAATGCGCTGCTCCTCAATTCAGATAATGGGAATCAAATTGGTGTATGTTGTGGGAGTGCCAAAAAATGGAGCAATGATCAATTTCATAAAGGAATTTAAGAGATATGGGTTGATGGTACTGAGTGCCATGGTGATTATGTCCTTAATTGGCACGATTAGCATTGTAATTATGAAAAAGGCACTAAAGAAGCAAAAAGAAGCAACGGAGGAAGCTGAGAGAAAGAGTAAGAATAAGAGCATTGCTTTTGCGACAGCATGCCATGATGTTCGTGCTTCCCTCGCAGCCCTGACTGGTTTGATAGAGTTGTCATCTTCGCAACTTGTCCCTTCTTCATCAGAACTAAACTCCAATCTCAAACAAATGGACTCTTATACCAAAGATTTACTAGGAATGCTGAATTCCATATTGGATGCAAGCAAGATTGAAGCAGGGGAAATGCAACTTGAGGAAGAAGAATTTGATGTGTTCCAATTCTTAGAGGAGGTAGTTGATTCTTACCATAATGTGGCTATGAAGAAAGGAGTAGATATTGTATTGGAACCTTTCAATGACTCAGTTCACAGATATTCACACACAAAGGGTGACAGAGTTAAACTCAAGAGAGTCTTATGCAACTTATTAGACAATGCTGTTAAATTCACTGATGAAGGACACATAGCAGTTAGGGTAAGGGCACAGAAACCTGCATTGCAAAACTCAATGTCAATGATGAGGGTTACTAACCAAAATAGACCTTGGTCATGCTTATTCATCAAAAGAAAAAATAATGAACGACGGAATGATGATGACATAGAAGCTTCTAATTCAACCCAACCAGATCCTAGTAATACCATGGATTTCATATTTGAAGTTGAAGATACTGGCAAAGGAATTCCCAAAGACAAGCATGAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTATTGACCATGGTGGAACTGGCTTGGGACTTGGCAGTGTGAGATCTTTGGTTCGATTGATGCATGGAGATATTAGAATTGTGGAGAAGGATAATGGTGGAAAAGGAACATGTTTCAGGTTCAATGTGCACCTCACTGTATGTGATAAAAGAACAGATGATATCACAAGAGAAAGTGAATCTAAACCAGTTGACAGAACTCAATCACACAGGTCAACCATTCATGCTACTAGTTCTGGTTCAAGCATGTGTTCCTTGAGTCCCAAGTTACCTATTTGCGGCCCTAGCACTTTTCGGCATGAGGGATCTCGAGTTGTTCTCTTGATTCAAGGAGAAGAGCGCCGAAGAGCAACACAAAGGTTCATAGAGAGAAAAGGGATCAAAGTTAAGGTTGTTAAGCAGTGGACTAATCTGTCTCATACCCTCAATAAGATAAAAAAGAAGGGTCTGAATAGCTTAAGTTCAGGTTCTAGTTCTAGTTCTGCAACACATGGTTCTACTAATGCCCCTTTGAGTGTTTCGATGGATGAAATTGAATCTACCCAAGGATTCGTCCTGATTGTGATTGATGCAAAAGCAGGACCATTTCAAGAACTATGCAGGGTGGTATCTGAATTCAAGAGAGGCATTTGTATTTCTTGTAGAGTTGTTTGGTTAGAGAATCCAATTTCTCCTAATCTTGATTTCAATAGCCTAAATGAGGATGATTATGATCCCAATGACATTGTTCTTCATAAACCATTACATGGTACCTCTTTGTTCCAAGTTTTAAGTCTTCTTCCAGAGTATGGTGATGGATCAATGCAAAGAGCTGAACTAGAAAAGTGCGGCACTTCAAGGTCAAGGAGTGGGAAGGAACCACAACAATCCATTGGAGATCAATCTCATGATCAAGGAGGAACAAAAGAGTGTGAAGTTCCAAGAAGCAGTGACAAGCCCTTGAGTGGTAAGAGAATCATGGTGGTTGAAGATGATAACACGATCCGCAAGATAGCTTCTGCTTCTTTGGAACAGCTTGGTGCTTCTGTTGAGAAATGTGAGAATGGTGAACAAGCTGTGGAGCTAGTTAAAGAGGGTCTAGCTAGAGATTTTCCAAATCTTCCATATGATTACATCTTTATGGACTGCCAGATGCCAGTGATGAATGGATATGAGGCAACAAGGCTAATAAGAGAGATAGAGAAAGAGTATAATATTCACATTCCTATATTTGCATTAACTGCTAATACTCAGGAAGAGGCAAATCCATTAGAAGCTGGAATGGACCATCACTTAGTCAAACCCATTGACAAAAAGGGTTTGCTTGAAGCCATCACAAAAGTACACGATAGAGTTGCCATTAGCGAATAG 3198 0.3837 MKPFLSMPLRPCSFFLILTYFILLVSLILCSYVLFTRLEYHVNLNSHKVLFQFQSEIEALTTLIQPMNYSSKNLARFINSSLNATNISFSDIKTKVAPLLFESFETVPQLAQISYIGMEGYFFSFYNGDHGQPLAIYSNRSTSSSIISKHYYVQPVNPDNGKLYGNATIFDSYVNTTWVGEALNGSNDGFVTLEKKLSNDQEFLFISSSRITKTGSVISLGVQATKITDFFFSVISHHQGAMLYLATKDGQVLQEGIKNTHMIVSKNDTVSFQYVNNHTSYYQGSVTCKNDGEVVASTLKIQGVEYLMRCSSIQIMGIKLVYVVGVPKNGAMINFIKEFKRYGLMVLSAMVIMSLIGTISIVIMKKALKKQKEATEEAERKSKNKSIAFATACHDVRASLAALTGLIELSSSQLVPSSSELNSNLKQMDSYTKDLLGMLNSILDASKIEAGEMQLEEEEFDVFQFLEEVVDSYHNVAMKKGVDIVLEPFNDSVHRYSHTKGDRVKLKRVLCNLLDNAVKFTDEGHIAVRVRAQKPALQNSMSMMRVTNQNRPWSCLFIKRKNNERRNDDDIEASNSTQPDPSNTMDFIFEVEDTGKGIPKDKHESVFENYVQVKETAIDHGGTGLGLGSVRSLVRLMHGDIRIVEKDNGGKGTCFRFNVHLTVCDKRTDDITRESESKPVDRTQSHRSTIHATSSGSSMCSLSPKLPICGPSTFRHEGSRVVLLIQGEERRRATQRFIERKGIKVKVVKQWTNLSHTLNKIKKKGLNSLSSGSSSSSATHGSTNAPLSVSMDEIESTQGFVLIVIDAKAGPFQELCRVVSEFKRGICISCRVVWLENPISPNLDFNSLNEDDYDPNDIVLHKPLHGTSLFQVLSLLPEYGDGSMQRAELEKCGTSRSRSGKEPQQSIGDQSHDQGGTKECEVPRSSDKPLSGKRIMVVEDDNTIRKIASASLEQLGASVEKCENGEQAVELVKEGLARDFPNLPYDYIFMDCQMPVMNGYEATRLIREIEKEYNIHIPIFALTANTQEEANPLEAGMDHHLVKPIDKKGLLEAITKVHDRVAISE* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0545 1065 ProSiteProfiles Histidine kinase domain profile. 391 663 IPR005467 -
Amo16g0545 1065 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 662 IPR003594 -
Amo16g0545 1065 ProSiteProfiles Response regulatory domain profile. 934 1058 IPR001789 GO:0000160
Amo16g0545 1065 SMART HKATPase_4 501 663 IPR003594 -
Amo16g0545 1065 Gene3D - 450 669 IPR036890 -
Amo16g0545 1065 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 659 IPR036890 -
Amo16g0545 1065 Gene3D - 910 1062 - -
Amo16g0545 1065 SMART REC_2 933 1054 IPR001789 GO:0000160
Amo16g0545 1065 Pfam Response regulator receiver domain 935 1054 IPR001789 GO:0000160
Amo16g0545 1065 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1057 - -
Amo16g0545 1065 CDD REC_hyHK_CKI1_RcsC-like 935 1054 - -
Amo16g0545 1065 PRINTS Bacterial sensor protein C-terminal signature 605 615 IPR004358 GO:0016310|GO:0016772
Amo16g0545 1065 PRINTS Bacterial sensor protein C-terminal signature 621 639 IPR004358 GO:0016310|GO:0016772
Amo16g0545 1065 PRINTS Bacterial sensor protein C-terminal signature 587 601 IPR004358 GO:0016310|GO:0016772
Amo16g0545 1065 PRINTS Bacterial sensor protein C-terminal signature 647 660 IPR004358 GO:0016310|GO:0016772
Amo16g0545 1065 PANTHER HISTIDINE KINASE CKI1-LIKE 39 1057 - -
Amo16g0545 1065 Coils Coil 361 385 - -
Amo16g0545 1065 MobiDBLite consensus disorder prediction 886 933 - -
Amo16g0545 1065 MobiDBLite consensus disorder prediction 672 696 - -
Amo16g0545 1065 MobiDBLite consensus disorder prediction 898 913 - -
Amo16g0545 1065 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 452 IPR036097 GO:0000155|GO:0007165
Amo16g0545 1065 SUPERFAMILY CheY-like 929 1060 IPR011006 -
Amo16g0545 1065 MobiDBLite consensus disorder prediction 914 933 - -
Amo16g0545 1065 SMART HisKA_10 384 451 IPR003661 GO:0000155|GO:0007165
Amo16g0545 1065 Gene3D - 362 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0545 Amo-Chr16 8883424 8887635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0545 10 1047 Histidine Kinase Gene Family AT2G47430 36.549 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g0545 HATPase_c 2.6e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0545 - - aip:107646610 1894.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0545 16 8883424 8887635 Amo16g0545 16 8883424 8887635 ECH