Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0532 ATGGGAAGAGCTCCCTGTTGTGACAAGGTGGGACTCAAGAAAGGCCGCTGGACAAAAGAGGAGGATCAAATCTTGACCAACTACATTCAAGCCAACGGAGAAGGTTCTTGGAGGGCTTTGCCTAAGAATGCTGGGTTACTAAGATGTGGCAAGAGTTGCAGATTGAGATGGATCAACTATTTGAGAGCTGATCTCAAAAGAGGAAACATCTCTGTTGAAGAGGAAACCATCATCACTAAGTTGCATGCTTCTTTTGGCAACAGGTGGTCACTGATAGCAAGTCATTTACCAGGCAGAACAGACAACGAGATCAAGAACTACTGGAACTCTCACTTGAGCAGGAAAGTTTACAGCTTGCCAGCCCCAAACGACAAAGACACAACCACTTGCGCCACCGCCACTGCCATTCCCAAGATCTTGGATACACCTCCGAAGCGTAAAGGTAGCGGCAAGACCAGCAGGTGGGCCATGAAGAAGAACAAAAGCACCTATTCGCCCCCAATCCAAACCCAGAAGCCTTCATCAGAGGAGGAGGGAAGAGGAGAAGTAAGTGAAAAAATGATGGAGTGTGAGGAGGGGAGCATTGATGATGGTGGGGTGTTGAGTTTTAATGACATAATGGAGTCAAGTTGCATGCAGCAGCTGGATGATGATCATCAACCATGTGGCCTTTCCACCGTTACTACTGCTGGGGTCCCAAATGATGACACGTGTCCCAACACTACTACTACTACAACAACAACAGGGGAGGCATCGCATTCTAACTGCTCTTCCAATAATTCCATGGCTTCTGGGTTAGAGTTAGATGATAGCTATTGGGAGAGCGTGTTGGAGTTGAATAATAATAGCACCGATGAGTCCTCCTGGGAGCACAGTACTGAAGCCTTGTTCAATTGGCTGTGGGAAGATCATCACTTGGACAAGCTTGGAGGACAACATCATGATGATGATGATCACAAACAAAATAATGCCATGATGGTTGATTGGTTTCTCTCCTGA 999 0.4675 MGRAPCCDKVGLKKGRWTKEEDQILTNYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRADLKRGNISVEEETIITKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKVYSLPAPNDKDTTTCATATAIPKILDTPPKRKGSGKTSRWAMKKNKSTYSPPIQTQKPSSEEEGRGEVSEKMMECEEGSIDDGGVLSFNDIMESSCMQQLDDDHQPCGLSTVTTAGVPNDDTCPNTTTTTTTTGEASHSNCSSNNSMASGLELDDSYWESVLELNNNSTDESSWEHSTEALFNWLWEDHHLDKLGGQHHDDDDHKQNNAMMVDWFLS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0532 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo16g0532 332 MobiDBLite consensus disorder prediction 140 183 - -
Amo16g0532 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo16g0532 332 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 314 - -
Amo16g0532 332 CDD SANT 16 61 IPR001005 -
Amo16g0532 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo16g0532 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo16g0532 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo16g0532 332 MobiDBLite consensus disorder prediction 237 260 - -
Amo16g0532 332 Gene3D - 11 67 - -
Amo16g0532 332 Gene3D - 71 116 - -
Amo16g0532 332 MobiDBLite consensus disorder prediction 155 174 - -
Amo16g0532 332 PANTHER MYB TRANSCRIPTION FACTOR 2 314 - -
Amo16g0532 332 CDD SANT 71 112 IPR001005 -
Amo16g0532 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo16g0532 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo16g0532 332 SMART sant 66 114 IPR001005 -
Amo16g0532 332 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0532 Amo-Chr16 8710532 8714229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0532 1 176 MYB Transcription Factor Family AT5G49330 59.474 9.18e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo16g0532 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0532 K09422 - gmx:100793350 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0532 16 8710532 8714229 Amo06g0095 06 995278 997709 hybridization