Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0514 ATGTCCTCCGATACTCACGCCGCCACACACCCCGCCACTCACGCCGCCCCTAATATCAACCCCAGGGGTCTTCTCTGCAATGCTGCAGCTGGCGCCGCCGCCGGTGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTAATCAAAACTAGGTTTCAGGTTCATGGGGTAGCGCAACTCCATAATGGACGTGTTAAAGCAGGCAGCATCATAGTTGGTAGCTTGGAACAAATATTTCACAAGGAGGGATTGCGTGGCATGTACCGTGGGTTGTCTCCCACTGTGCTAGCTTTACTGCCAAACTGGGCTGTATATTTTACCATGTATGAACAGCTCAAGAGCCTTCTTCAGCCTGAGGATTGCCATAATCTTTCAGTTGGAGCTAATATGATGGCCGCTTCTGGTGCTGGAGCTGCAACAACAATGTTCACAAATCCACTTTGGGTTGTCAAGACTAGACTCCAAACTCAGGGAATGAGATCTGGTGTTGTGCCATATAGGAGCACTCTTTCTGCATTGAGGAGAATTGCACACGAGGAGGGTATTCGAGGGCTGTACAGTGGACTTGTACCTGCGCTGGCTGGTATCAGTCATGTTGCCATCCAGTTTCCAACATACGAGAAAATAAAATGTTACTTGGCAACTCAAGGTGACACATCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCCTCATCAGTCTCCAAAATTTTTGCATCAACATTGACATATCCCCATGAGGTTGTACGTTCCAGACTGCAAGAGCAAGGGCACCATTCTGAGAAAAGGTACTCGGGTGTGATTGATTGCGTTCGGAAGGTTTTTCAGCAAGAGGGCATACCTGGGTTTTACCGTGGGTGTGCCACCAACCTTCTGAGGACAACACCAGCTGCTGTAATCACATTCACAAGCTTTGAAATGATACATCGTTTTCTTGTTTCGGTTTTTCCGTCTGATCCGCAGCCTCAGATTTTGTGA 981 0.476 MSSDTHAATHPATHAAPNINPRGLLCNAAAGAAAGVIAATFVCPLDVIKTRFQVHGVAQLHNGRVKAGSIIVGSLEQIFHKEGLRGMYRGLSPTVLALLPNWAVYFTMYEQLKSLLQPEDCHNLSVGANMMAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKCYLATQGDTSMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCVRKVFQQEGIPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSVFPSDPQPQIL* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0514 326 Gene3D Mitochondrial carrier domain 121 316 IPR023395 -
Amo16g0514 326 Gene3D Mitochondrial carrier domain 5 120 IPR023395 -
Amo16g0514 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 115 IPR018108 -
Amo16g0514 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 212 IPR018108 -
Amo16g0514 326 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Amo16g0514 326 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Amo16g0514 326 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Amo16g0514 326 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Amo16g0514 326 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Amo16g0514 326 SUPERFAMILY Mitochondrial carrier 24 308 IPR023395 -
Amo16g0514 326 Pfam Mitochondrial carrier protein 230 314 IPR018108 -
Amo16g0514 326 Pfam Mitochondrial carrier protein 124 214 IPR018108 -
Amo16g0514 326 Pfam Mitochondrial carrier protein 24 117 IPR018108 -
Amo16g0514 326 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 18 325 IPR044712 GO:0006862|GO:0055085
Amo16g0514 326 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 18 325 - -
Amo16g0514 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 312 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0514 Amo-Chr16 8484561 8488268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0514 20 326 Chloroplast and Mitochondria Gene Families AT2G47490 78.827 8.18e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0514 K15115 - gmx:100500213 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0514 16 8484561 8488268 Amo16g0514 16 8484561 8488268 ECH