Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0513 ATGTCTAGTGTGGTGGAGTCTAAGAGTGATGGTTGTTATTATTCGGTGCTTGGGGTTCGCAAGCACTCAACCGATCACGAAATTCGTTGCGCTTATCGTAAGATGGCTCTGAAATGGCACCCTGATCGGTGGATCAAAGAACCAAAGCTTGCGGTGGAAGCAAAGAAACAGTTTCAGCATATTCAAGAGGCTTATTCAGTTTTGTCTAATAAAGGGAAGAGAATGATATATGACGCGGGAATGTTTGGTTTTATTGGAGAAGACGATGATGAGGGATTTGTTGATTTCATGCAAGAAATGGTCTTGACAATGCAGAAAGTGAAACACCAGGGTGAGAAATGCATGATGGAGGATTTTCAGGGAATACTAATGGATATGATAGCAGAAAGTGATGAAGGGAGTGGCAAATCCGGGTTATGTTGGAGCTCCTCTAATAGTCCTAAGAAAAAGACACGTATCTTATAG 465 0.4194 MSSVVESKSDGCYYSVLGVRKHSTDHEIRCAYRKMALKWHPDRWIKEPKLAVEAKKQFQHIQEAYSVLSNKGKRMIYDAGMFGFIGEDDDEGFVDFMQEMVLTMQKVKHQGEKCMMEDFQGILMDMIAESDEGSGKSGLCWSSSNSPKKKTRIL* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0513 154 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Amo16g0513 154 MobiDBLite consensus disorder prediction 135 154 - -
Amo16g0513 154 Gene3D DnaJ domain 1 84 IPR036869 -
Amo16g0513 154 SMART dnaj_3 11 73 IPR001623 -
Amo16g0513 154 PANTHER PUTATIVE, EXPRESSED-RELATED 5 153 - -
Amo16g0513 154 Pfam DnaJ domain 13 78 IPR001623 -
Amo16g0513 154 PRINTS DnaJ domain signature 14 32 IPR001623 -
Amo16g0513 154 PRINTS DnaJ domain signature 32 47 IPR001623 -
Amo16g0513 154 PRINTS DnaJ domain signature 53 73 IPR001623 -
Amo16g0513 154 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Amo16g0513 154 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 6-LIKE 5 153 - -
Amo16g0513 154 MobiDBLite consensus disorder prediction 136 154 - -
Amo16g0513 154 CDD DnaJ 12 70 IPR001623 -
Amo16g0513 154 SUPERFAMILY Chaperone J-domain 11 100 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0513 Amo-Chr16 8447649 8448979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0513 12 79 C2H2 Transcription Factor Family AT1G74250 46.377 2.35e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0513 - - pvu:PHAVU_001G210400g 219.935